Citrobacter amalonaticus strain NCTC10805

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain NCTC10805 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This means that it can grow in both the presence and absence of oxygen, which contributes to its versatility in various environments. C. amalonaticus is primarily found in the gut of Homo sapiens, indicating its role in the human microbiota. The strain has been characterized by the presence of flagella, which are important for motility and may influence its ability to colonize and thrive within the gut environment. C. amalonaticus has one replicon, suggesting a relatively simple genetic organization compared to more complex organisms. The genomic data for this strain is accessible under the accession number UFVN00000000.1. Understanding the ecological role of C. amalonaticus in the human gut is crucial, as gut microbiota are known to have significant implications for human health. They contribute to digestion, synthesis of vitamins, and protection against pathogens. The presence of a facultative anaerobe like C. amalonaticus can be indicative of the dynamic interactions occurring in the gut ecosystem, where varying oxygen levels and microbial competition are prevalent. Further research into this strain may provide insights into its specific functions and potential benefits or risks associated with its presence in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain NCTC10805

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain NCTC10805
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain NCTC10805 genome assembly, contig:

Gene Summary

Adenine Count

1188892 bp

Thymine Count

1183059 bp

Guanine Count

1357787 bp

Cytosine Count

1363602 bp

Genome Length

5093340 bp

Protein-coding Genes

5207 genes

Non-Coding Genes

237 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dihydrofolate reductaseNCTC10805_01424Not AvailablePositive1255992 - 125647117987.2
diadenosine tetraphosphataseNCTC10805_01425Not AvailableNegative1256564 - 125741231531.5
apag proteinNCTC10805_01426Not AvailableNegative1257497 - 125779911437.7
dimethyladenosine transferaseNCTC10805_01427Not AvailableNegative1257802 - 125862330502.0
4-hydroxythreonine-4-phosphate dehydrogenaseNCTC10805_01428Not AvailableNegative1258620 - 125960935030.7
peptidyl-prolyl cis-trans isomerase suraNCTC10805_01429Not AvailableNegative1259609 - 126089547169.3
organic solvent tolerance protein precursorNCTC10805_01430Not AvailableNegative1260949 - 126134414873.4
organic solvent tolerance protein precursorNCTC10805_01431Not AvailableNegative1261403 - 126330472551.9
dna-j like membrane chaperone proteinNCTC10805_01432Not AvailablePositive1263560 - 126437530632.2
23s rrna/trna pseudouridine synthase aNCTC10805_01433Not AvailableNegative1264539 - 126519824858.1

Displaying genes 1531 – 1540 of 5444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.