Citrobacter amalonaticus strain NCTC10805

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain NCTC10805 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This means that it can grow in both the presence and absence of oxygen, which contributes to its versatility in various environments. C. amalonaticus is primarily found in the gut of Homo sapiens, indicating its role in the human microbiota. The strain has been characterized by the presence of flagella, which are important for motility and may influence its ability to colonize and thrive within the gut environment. C. amalonaticus has one replicon, suggesting a relatively simple genetic organization compared to more complex organisms. The genomic data for this strain is accessible under the accession number UFVN00000000.1. Understanding the ecological role of C. amalonaticus in the human gut is crucial, as gut microbiota are known to have significant implications for human health. They contribute to digestion, synthesis of vitamins, and protection against pathogens. The presence of a facultative anaerobe like C. amalonaticus can be indicative of the dynamic interactions occurring in the gut ecosystem, where varying oxygen levels and microbial competition are prevalent. Further research into this strain may provide insights into its specific functions and potential benefits or risks associated with its presence in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain NCTC10805

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain NCTC10805
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain NCTC10805 genome assembly, contig:

Gene Summary

Adenine Count

1188892 bp

Thymine Count

1183059 bp

Guanine Count

1357787 bp

Cytosine Count

1363602 bp

Genome Length

5093340 bp

Protein-coding Genes

5207 genes

Non-Coding Genes

237 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts system transporter subunit iia-like nitrogen-regulatory protein ptsnNCTC10805_01006Not AvailableNegative883142 - 88363317846.5
putative sigma(54) modulation proteinNCTC10805_01007Not AvailableNegative883749 - 88403610791.0
rna polymerase factor sigma-54NCTC10805_01008Not AvailableNegative884059 - 88549253731.6
putative abc transporter atp-binding protein yhbgNCTC10805_01009Not AvailableNegative885540 - 88626526850.3
lipopolysaccharide transport periplasmic protein lptaNCTC10805_01010Not AvailableNegative886272 - 88682620057.0
organic solvent tolerance proteinNCTC10805_01011Not AvailableNegative886795 - 88737021626.7
3-deoxy-d-manno-octulosonate 8-phosphate phosphataseNCTC10805_01012Not AvailableNegative887367 - 88793319991.4
d-arabinose 5-phosphate isomeraseNCTC10805_01013Not AvailableNegative887954 - 88894034909.7
putative calcium/sodium:proton antiporterNCTC10805_01014Not AvailableNegative888955 - 88993234518.7
putative abc transporter atp-binding protein yrbfNCTC10805_01015Not AvailablePositive890141 - 89095329255.8

Displaying genes 1121 – 1130 of 5444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.