Rhodobacter capsulatus strain SP108

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter capsulatus strain SP108 is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. This strain is characterized as a chemoheterotroph, indicating that it derives energy from organic compounds rather than photosynthesis. R. capsulatus strain SP108 is a facultative anaerobe, allowing it to survive in both the presence and absence of oxygen, which enhances its adaptability to varying environmental conditions. This bacterium is motile, possessing flagella that facilitate movement. It has an optimal growth temperature of 30°C and falls within the mesophilic temperature range, suggesting that it is well-suited for moderate thermal conditions. R. capsulatus strain SP108 contains a single replicon, indicating a streamlined genetic organization. As a free-living organism, R. capsulatus strain SP108 does not rely on a host for survival; however, it has been associated with Triticum aestivum (common wheat), indicating potential interactions or roles in plant-associated microbiomes. The absence of sporulation suggests that this strain relies on other survival strategies to cope with environmental stressors. The ecological significance of R. capsulatus strain SP108 may be tied to its role in nutrient cycling in aquatic ecosystems. Its ability to utilize organic compounds as an energy source could contribute to the decomposition process and support the health of aquatic environments by maintaining microbial diversity and stability.

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodobacter capsulatus strain SP108
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Triticum aestivum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Rhodobacter capsulatus strain SP108

Gene Summary

Adenine Count

717843 bp

Thymine Count

712950 bp

Guanine Count

1388676 bp

Cytosine Count

1408161 bp

Genome Length

4227650 bp

Protein-coding Genes

3836 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf934 domain-containing proteinFBT96_16730Not AvailablePositive3485656 - 348605414062.6
ferredoxin--nadp reductaseFBT96_16735Not AvailablePositive3486229 - 348702329638.8
hypothetical proteinFBT96_16740Not AvailablePositive3487136 - 348820637915.9
translation initiation factor if-3FBT96_16745Not AvailablePositive3488341 - 348888020295.0
l,d-transpeptidaseFBT96_16750Not AvailablePositive3489052 - 348966322402.0
ribosome biogenesis gtpase derFBT96_16755Not AvailableNegative3489791 - 349129054929.3
quinoproteinFBT96_16760Not AvailableNegative3491366 - 349264043164.0
hypothetical proteinFBT96_16765Not AvailableNegative3492723 - 349336722200.6
tigr00730 family rossman fold proteinFBT96_16770Not AvailableNegative3493725 - 349428519785.9
lysm peptidoglycan-binding domain-containing proteinFBT96_16775Not AvailablePositive3494799 - 349567129263.6

Displaying genes 3311 – 3320 of 3998 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

54 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0001939spheroideneC41H60OChemical structure of spheroideneNot available
Average568.93Da
Monoisotopic568.464416552Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002584(S)-malyl-CoAC25H35N7O20P3SChemical structure of (S)-malyl-CoANot available
Average878.57Da
Monoisotopic878.0897866Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da

Displaying 1–10 of 54 metabolites

Health Effects

No health effects information available for this bacterium.