Rhodobacter capsulatus strain SP108

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Genus

Rhodobacter

Description

Rhodobacter capsulatus strain SP108 is a Gram-negative, rod-shaped bacterium that thrives in aquatic environments. This strain is characterized as a chemoheterotroph, indicating that it derives energy from organic compounds rather than photosynthesis. R. capsulatus strain SP108 is a facultative anaerobe, allowing it to survive in both the presence and absence of oxygen, which enhances its adaptability to varying environmental conditions. This bacterium is motile, possessing flagella that facilitate movement. It has an optimal growth temperature of 30°C and falls within the mesophilic temperature range, suggesting that it is well-suited for moderate thermal conditions. R. capsulatus strain SP108 contains a single replicon, indicating a streamlined genetic organization. As a free-living organism, R. capsulatus strain SP108 does not rely on a host for survival; however, it has been associated with Triticum aestivum (common wheat), indicating potential interactions or roles in plant-associated microbiomes. The absence of sporulation suggests that this strain relies on other survival strategies to cope with environmental stressors. The ecological significance of R. capsulatus strain SP108 may be tied to its role in nutrient cycling in aquatic ecosystems. Its ability to utilize organic compounds as an energy source could contribute to the decomposition process and support the health of aquatic environments by maintaining microbial diversity and stability.

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodobacter capsulatus strain SP108
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Triticum aestivum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Rhodobacter capsulatus strain SP108

Gene Summary

Adenine Count

717843 bp

Thymine Count

712950 bp

Guanine Count

1388676 bp

Cytosine Count

1408161 bp

Genome Length

4227650 bp

Protein-coding Genes

3836 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ef-p lysine aminoacylase genxFBT96_00855Not AvailableNegative157114 - 15816338108.3
elongation factor pFBT96_00860Not AvailablePositive158262 - 15883120831.8
transcriptional repressorFBT96_00865Not AvailableNegative159070 - 15948615470.6
bifunctional 3-hydroxydecanoyl-acp dehydratase/trans-2-decenoyl-acp isomeraseFBT96_00870Not AvailablePositive159641 - 16015018569.6
beta-ketoacyl-acp synthase iFBT96_00875Not AvailablePositive160174 - 16140343186.4
sdr family oxidoreductaseFBT96_00880Not AvailablePositive161410 - 16219827733.1
alpha/beta hydrolaseFBT96_00885Not AvailablePositive162257 - 16308430043.2
calcium-binding proteinFBT96_00890Not AvailablePositive163176 - 16507464566.8
s-methyl-5-thioribose-1-phosphate isomeraseFBT96_00895Not AvailablePositive165252 - 16635539889.9
sugar-binding transcriptional regulatorFBT96_00900Not AvailableNegative166564 - 16754734742.1

Displaying genes 281 – 290 of 3998 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

54 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0001939spheroideneC41H60OChemical structure of spheroideneNot available
Average568.93Da
Monoisotopic568.464416552Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002584(S)-malyl-CoAC25H35N7O20P3SChemical structure of (S)-malyl-CoANot available
Average878.57Da
Monoisotopic878.0897866Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da

Displaying 1–10 of 54 metabolites

Health Effects

No health effects information available for this bacterium.