Rathayibacter tanaceti strain VKM Ac-2596

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter tanaceti strain VKM Ac-2596 is a Gram-positive, rod-shaped bacterium characterized by its single replicon. This strain is cataloged under the accession number SLWP00000000.1, which denotes its genomic data in public databases. The classification of Rathayibacter tanaceti emphasizes its notable distinction within the genus Rathayibacter, which consists of bacteria that are often associated with plant hosts and can be involved in specific plant-pathogen interactions. The Gram-positive nature of strain VKM Ac-2596 indicates the presence of a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can be resilient in certain environments. The ecological role and biological interactions of Rathayibacter tanaceti, particularly in relation to its plant hosts, merit further investigation. Understanding its lifestyle and pathogenicity could provide insights into its impact on agricultural practices, especially considering its association with plants like tanacetum. The single replicon structure may also suggest a streamlined genomic organization, which could influence its adaptability and interactions within various ecosystems. Overall, the traits of Rathayibacter tanaceti strain VKM Ac-2596 highlight its potential significance in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter tanaceti
Strainstrain VKM Ac-2596

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter tanaceti strain VKM Ac-2596 Ga0310558_121, whole

Gene Summary

Adenine Count

465928 bp

Thymine Count

466483 bp

Guanine Count

1130998 bp

Cytosine Count

1129680 bp

Genome Length

3193474 bp

Protein-coding Genes

2985 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative naringenin-chalcone synthaseEV639_10997Not AvailablePositive2697964 - 269907938990.3
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylaseEV639_10998Not AvailablePositive2699139 - 269978623563.9
hypothetical proteinEV639_10999Not AvailablePositive2699783 - 270013312067.8
hypothetical proteinEV639_109100Not AvailableNegative2700130 - 27003307045.72
nitroreductase family proteinEV639_109101Not AvailablePositive2700888 - 270169130495.6
hypothetical proteinEV639_109102Not AvailablePositive2702012 - 270232911924.2
protein-disulfide isomeraseEV639_109103Not AvailablePositive2702417 - 270314225235.7
cytochrome c biogenesis protein ccdaEV639_109104Not AvailablePositive2703146 - 270397627544.6
glutathione peroxidaseEV639_109105Not AvailableNegative2703962 - 270444718010.3
bifunctional non-homologous end joining protein ligdEV639_109106Not AvailablePositive2704603 - 270712590225.4

Displaying genes 2561 – 2570 of 3035 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.