Rathayibacter tanaceti strain VKM Ac-2596

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter tanaceti strain VKM Ac-2596 is a Gram-positive, rod-shaped bacterium characterized by its single replicon. This strain is cataloged under the accession number SLWP00000000.1, which denotes its genomic data in public databases. The classification of Rathayibacter tanaceti emphasizes its notable distinction within the genus Rathayibacter, which consists of bacteria that are often associated with plant hosts and can be involved in specific plant-pathogen interactions. The Gram-positive nature of strain VKM Ac-2596 indicates the presence of a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can be resilient in certain environments. The ecological role and biological interactions of Rathayibacter tanaceti, particularly in relation to its plant hosts, merit further investigation. Understanding its lifestyle and pathogenicity could provide insights into its impact on agricultural practices, especially considering its association with plants like tanacetum. The single replicon structure may also suggest a streamlined genomic organization, which could influence its adaptability and interactions within various ecosystems. Overall, the traits of Rathayibacter tanaceti strain VKM Ac-2596 highlight its potential significance in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter tanaceti
Strainstrain VKM Ac-2596

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter tanaceti strain VKM Ac-2596 Ga0310558_121, whole

Gene Summary

Adenine Count

465928 bp

Thymine Count

466483 bp

Guanine Count

1130998 bp

Cytosine Count

1129680 bp

Genome Length

3193474 bp

Protein-coding Genes

2985 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prephenate dehydrogenaseEV639_107185Not AvailableNegative2461934 - 246304038518.1
23s rrna pseudouridine2605 synthase/16s rrna pseudouridine516 synthaseEV639_107186Not AvailableNegative2463050 - 246402134412.9
segregation and condensation protein bEV639_107187Not AvailableNegative2464008 - 246458920747.8
condensin subunit scpaEV639_107188Not AvailableNegative2464579 - 246540330228.1
chromosome partitioning proteinEV639_107189Not AvailableNegative2465387 - 246627431620.3
integrase/recombinase xerdEV639_107190Not AvailableNegative2466383 - 246729133150.7
adp-ribose pyrophosphataseEV639_107191Not AvailableNegative2467288 - 246791723285.3
ctp synthaseEV639_107192Not AvailableNegative2467910 - 246968864068.6
dna repair protein recn (recombination protein n)EV639_107193Not AvailableNegative2469767 - 247145559108.9
nad+ kinaseEV639_107194Not AvailableNegative2471462 - 247238532984.5

Displaying genes 2331 – 2340 of 3035 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.