Rathayibacter tanaceti strain VKM Ac-2596

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter tanaceti strain VKM Ac-2596 is a Gram-positive, rod-shaped bacterium characterized by its single replicon. This strain is cataloged under the accession number SLWP00000000.1, which denotes its genomic data in public databases. The classification of Rathayibacter tanaceti emphasizes its notable distinction within the genus Rathayibacter, which consists of bacteria that are often associated with plant hosts and can be involved in specific plant-pathogen interactions. The Gram-positive nature of strain VKM Ac-2596 indicates the presence of a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can be resilient in certain environments. The ecological role and biological interactions of Rathayibacter tanaceti, particularly in relation to its plant hosts, merit further investigation. Understanding its lifestyle and pathogenicity could provide insights into its impact on agricultural practices, especially considering its association with plants like tanacetum. The single replicon structure may also suggest a streamlined genomic organization, which could influence its adaptability and interactions within various ecosystems. Overall, the traits of Rathayibacter tanaceti strain VKM Ac-2596 highlight its potential significance in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter tanaceti
Strainstrain VKM Ac-2596

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter tanaceti strain VKM Ac-2596 Ga0310558_121, whole

Gene Summary

Adenine Count

465928 bp

Thymine Count

466483 bp

Guanine Count

1130998 bp

Cytosine Count

1129680 bp

Genome Length

3193474 bp

Protein-coding Genes

2985 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide/nickel transport system substrate-binding proteinEV639_107145Not AvailableNegative2405556 - 240721459072.8
alkylation response protein aidb-like acyl-coa dehydrogenaseEV639_107146Not AvailableNegative2407242 - 240841441568.4
alkanesulfonate monooxygenaseEV639_107147Not AvailableNegative2408411 - 240958942502.9
hypothetical proteinEV639_107148Not AvailableNegative2409768 - 24100349306.31
dna-binding transcriptional lysr family regulatorEV639_107149Not AvailableNegative2410031 - 241091831552.2
emrb/qaca subfamily drug resistance transporterEV639_107150Not AvailableNegative2411035 - 241254951902.2
tetr family transcriptional regulatorEV639_107151Not AvailablePositive2412650 - 241328522562.5
excalibur calcium-binding domain-containing proteinEV639_107152Not AvailableNegative2413361 - 241466844706.6
argininosuccinate synthaseEV639_107153Not AvailablePositive2415035 - 241647151707.0
tetr family transcriptional regulatorEV639_107154Not AvailableNegative2416535 - 241712220702.6

Displaying genes 2291 – 2300 of 3035 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.