Rathayibacter tanaceti strain VKM Ac-2596

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter tanaceti strain VKM Ac-2596 is a Gram-positive, rod-shaped bacterium characterized by its single replicon. This strain is cataloged under the accession number SLWP00000000.1, which denotes its genomic data in public databases. The classification of Rathayibacter tanaceti emphasizes its notable distinction within the genus Rathayibacter, which consists of bacteria that are often associated with plant hosts and can be involved in specific plant-pathogen interactions. The Gram-positive nature of strain VKM Ac-2596 indicates the presence of a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can be resilient in certain environments. The ecological role and biological interactions of Rathayibacter tanaceti, particularly in relation to its plant hosts, merit further investigation. Understanding its lifestyle and pathogenicity could provide insights into its impact on agricultural practices, especially considering its association with plants like tanacetum. The single replicon structure may also suggest a streamlined genomic organization, which could influence its adaptability and interactions within various ecosystems. Overall, the traits of Rathayibacter tanaceti strain VKM Ac-2596 highlight its potential significance in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter tanaceti
Strainstrain VKM Ac-2596

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter tanaceti strain VKM Ac-2596 Ga0310558_121, whole

Gene Summary

Adenine Count

465928 bp

Thymine Count

466483 bp

Guanine Count

1130998 bp

Cytosine Count

1129680 bp

Genome Length

3193474 bp

Protein-coding Genes

2985 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoylalanine--d-glutamate ligaseEV639_10785Not AvailableNegative2346135 - 234767053939.2
phospho-n-acetylmuramoyl-pentapeptide- transferaseEV639_10786Not AvailableNegative2347667 - 234876139309.8
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseEV639_10787Not AvailableNegative2348758 - 235018249545.2
udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligaseEV639_10788Not AvailableNegative2350183 - 235170053753.6
cell division protein ftsi (penicillin-binding protein 3)EV639_10789Not AvailableNegative2351844 - 235368264891.7
hypothetical proteinEV639_10790Not AvailableNegative2353739 - 235430818946.6
16s rrna (cytosine1402-n4)-methyltransferaseEV639_10791Not AvailableNegative2354305 - 235528835964.1
mraz proteinEV639_10792Not AvailableNegative2355397 - 235582816072.0
duf3040 family proteinEV639_10793Not AvailableNegative2356067 - 235645613689.6
geranylgeranyl diphosphate synthase type iEV639_10794Not AvailablePositive2356601 - 235770139249.2

Displaying genes 2231 – 2240 of 3035 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.