Rathayibacter tanaceti strain VKM Ac-2596

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter tanaceti strain VKM Ac-2596 is a Gram-positive, rod-shaped bacterium characterized by its single replicon. This strain is cataloged under the accession number SLWP00000000.1, which denotes its genomic data in public databases. The classification of Rathayibacter tanaceti emphasizes its notable distinction within the genus Rathayibacter, which consists of bacteria that are often associated with plant hosts and can be involved in specific plant-pathogen interactions. The Gram-positive nature of strain VKM Ac-2596 indicates the presence of a thick peptidoglycan layer in its cell wall, a trait commonly associated with bacteria that can be resilient in certain environments. The ecological role and biological interactions of Rathayibacter tanaceti, particularly in relation to its plant hosts, merit further investigation. Understanding its lifestyle and pathogenicity could provide insights into its impact on agricultural practices, especially considering its association with plants like tanacetum. The single replicon structure may also suggest a streamlined genomic organization, which could influence its adaptability and interactions within various ecosystems. Overall, the traits of Rathayibacter tanaceti strain VKM Ac-2596 highlight its potential significance in microbial ecology and agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter tanaceti
Strainstrain VKM Ac-2596

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter tanaceti strain VKM Ac-2596 Ga0310558_121, whole

Gene Summary

Adenine Count

465928 bp

Thymine Count

466483 bp

Guanine Count

1130998 bp

Cytosine Count

1129680 bp

Genome Length

3193474 bp

Protein-coding Genes

2985 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lsu ribosomal protein l2pEV639_105237Not AvailableNegative1988255 - 198909430367.5
lsu ribosomal protein l23pEV639_105238Not AvailableNegative1989122 - 198943011252.6
large subunit ribosomal protein l4EV639_105239Not AvailableNegative1989427 - 199008923457.3
large subunit ribosomal protein l3EV639_105240Not AvailableNegative1990094 - 199076223380.3
ssu ribosomal protein s10pEV639_105241Not AvailableNegative1990777 - 199108511569.2
dna topoisomerase-1EV639_105242Not AvailableNegative1991538 - 199252135975.5
antitoxin protein of toxin-antitoxin systemEV639_105243Not AvailableNegative1992597 - 19928067522.55
fructosamine-3-kinaseEV639_105244Not AvailableNegative1992894 - 199366427363.1
translation elongation factor 1a (ef-1a/ef-tu)EV639_105245Not AvailableNegative1993766 - 199495943246.6
elongation factor gEV639_105246Not AvailableNegative1995183 - 199729777565.6

Displaying genes 1881 – 1890 of 3035 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.