Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrodipicolinate synthase family protein | EZ449_03975 | Not Available | Positive | 944286 - 945218 | 34629.6 |
| arac family transcriptional regulator | EZ449_03980 | Not Available | Negative | 945466 - 946335 | 33643.8 |
| duf3826 domain-containing protein | EZ449_03985 | Not Available | Positive | 946699 - 947379 | 26010.2 |
| susc/raga family tonb-linked outer membrane protein | EZ449_03990 | Not Available | Positive | 947849 - 951004 | 115938.0 |
| ragb/susd family nutrient uptake outer membrane protein | EZ449_03995 | Not Available | Positive | 951015 - 952910 | 70003.9 |
| hypothetical protein | EZ449_04000 | Not Available | Positive | 952958 - 953944 | 36037.9 |
| polysaccharide lyase | EZ449_04005 | Not Available | Positive | 954332 - 955987 | 60922.6 |
| polysaccharide lyase | EZ449_04010 | Not Available | Positive | 955989 - 957620 | 59448.6 |
| giy-yig nuclease family protein | EZ449_04015 | Not Available | Positive | 957687 - 957989 | 12416.8 |
| pectate lyase | EZ449_04020 | Not Available | Positive | 958145 - 961297 | 116705.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

