Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnogalacturonan acetylesterase | EZ449_02550 | Not Available | Positive | 594582 - 595322 | 27495.3 |
| nadp-dependent glyceraldehyde-3-phosphate dehydrogenase | EZ449_02555 | Not Available | Negative | 595565 - 597190 | 60452.9 |
| mfs transporter | EZ449_02560 | Not Available | Negative | 597292 - 598731 | 53596.7 |
| bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | EZ449_02565 | Not Available | Negative | 598754 - 599413 | 24075.5 |
| sugar kinase | EZ449_02570 | Not Available | Negative | 599409 - 600464 | 39158.7 |
| glucuronate isomerase | EZ449_02575 | Not Available | Negative | 600554 - 601954 | 53774.6 |
| altronate dehydratase | EZ449_02580 | Not Available | Negative | 602155 - 603801 | 59602.1 |
| tagaturonate reductase | EZ449_02585 | Not Available | Negative | 603803 - 605314 | 56440.5 |
| pectate lyase | EZ449_02590 | Not Available | Negative | 605370 - 606386 | 38025.5 |
| glycoside hydrolase family 88 protein | EZ449_02595 | Not Available | Negative | 606796 - 608727 | 71707.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

