Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | EZ449_01990 | Not Available | Positive | 468886 - 471267 | 88220.4 |
| thiamine phosphate synthase | EZ449_01995 | Not Available | Positive | 471394 - 472026 | 23302.8 |
| thiamine pyrophosphokinase | EZ449_02000 | Not Available | Positive | 472071 - 472634 | 21236.2 |
| gnat family n-acetyltransferase | EZ449_02005 | Not Available | Positive | 472631 - 473125 | 18593.5 |
| tonb-dependent receptor | EZ449_02010 | Not Available | Negative | 473337 - 475778 | 90884.9 |
| zn-dependent hydrolase | EZ449_02015 | Not Available | Negative | 476214 - 477893 | 62613.2 |
| n-acetylmuramoyl-l-alanine amidase | EZ449_02020 | Not Available | Positive | 478007 - 478843 | 30979.0 |
| peptidase s41 | EZ449_02025 | Not Available | Negative | 478884 - 481142 | 84665.1 |
| glutamine--trna ligase/yqey domain fusion protein | EZ449_02030 | Not Available | Negative | 481320 - 482975 | 63536.0 |
| cobalamin b12-binding domain-containing protein | EZ449_02035 | Not Available | Positive | 483190 - 483609 | 15159.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

