Pedobacter frigidisoli strain RP-3-11

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter frigidisoli strain RP-3-11 is a notable member of the Pedobacter genus, characterized by the presence of flagella, which may contribute to its motility in various environments. This strain is documented with a single replicon, indicating a streamlined genetic organization that might be advantageous for its adaptability to different ecological niches. The strain has been assigned the accession number SJSN00000000.1, which serves as a reference for its genomic sequence and provides a basis for further research into its genetic and metabolic capabilities. The presence of flagella suggests that Pedobacter frigidisoli strain RP-3-11 can navigate through its surroundings, potentially enhancing its ability to colonize and thrive in diverse habitats, including cold environments, as implied by the species name "frigidisoli." Understanding the motility mechanisms of this strain could offer insights into its ecological role, particularly in nutrient cycling and interactions with other microorganisms in soil ecosystems. The ability to move and adapt to varying conditions may enable Pedobacter frigidisoli strain RP-3-11 to participate in the degradation of organic matter, contributing to soil health and nutrient availability. Overall, the traits of Pedobacter frigidisoli strain RP-3-11 underline its potential significance in ecological processes, especially in cold soil environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter frigidisoli
Strainstrain RP-3-11

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter frigidisoli strain RP-3-11 contig60, whole genome

Gene Summary

Adenine Count

1653740 bp

Thymine Count

1643646 bp

Guanine Count

977966 bp

Cytosine Count

998159 bp

Genome Length

5273566 bp

Protein-coding Genes

4365 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
site-specific integraseEZ449_21125Not AvailablePositive4965666 - 496693749584.5
atp-binding proteinEZ449_21130Not AvailableNegative4967360 - 49675607639.26
transposaseEZ449_21135Not AvailablePositive4967561 - 496782910178.3
bifunctional alpha,alpha-trehalose-phosphate synthase (udp-forming)/trehalose-phosphataseEZ449_21140Not AvailableNegative4967830 - 497006785783.7
pas domain-containing proteinEZ449_21145Not AvailableNegative4970514 - 497187252042.3
sigma-54-dependent fis family transcriptional regulatorEZ449_21150Not AvailableNegative4971963 - 497337252912.2
hlyd family efflux transporter periplasmic adaptor subunitEZ449_21155Not AvailablePositive4973679 - 497492346265.3
abc transporter atp-binding proteinEZ449_21160Not AvailablePositive4975080 - 497577826155.5
ftsx-like permease family proteinEZ449_21165Not AvailablePositive4976055 - 497842488279.1
abc transporter permeaseEZ449_21170Not AvailablePositive4978566 - 498095388757.7

Displaying genes 4161 – 4170 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.