Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m1 family peptidase | EZ449_20555 | Not Available | Negative | 4810916 - 4812895 | 74343.0 |
| carboxypeptidase-like regulatory domain-containing protein | EZ449_20560 | Not Available | Negative | 4813001 - 4813786 | 29771.1 |
| spx/mgsr family rna polymerase-binding regulatory protein | EZ449_20565 | Not Available | Negative | 4813810 - 4814157 | 13506.1 |
| ghkl domain-containing protein | EZ449_20570 | Not Available | Positive | 4814379 - 4815917 | 58611.2 |
| response regulator transcription factor | EZ449_20575 | Not Available | Positive | 4815951 - 4816625 | 25588.2 |
| hypothetical protein | EZ449_20580 | Not Available | Negative | 4816627 - 4823067 | 244698.0 |
| 6,7-dimethyl-8-ribityllumazine synthase | EZ449_20585 | Not Available | Positive | 4823236 - 4823727 | 17247.5 |
| bacillithiol system redox-active protein ytxj | EZ449_20590 | Not Available | Positive | 4824056 - 4824388 | 12357.7 |
| malate:quinone oxidoreductase | EZ449_20595 | Not Available | Negative | 4824460 - 4825968 | 55935.4 |
| short-chain dehydrogenase | EZ449_20600 | Not Available | Positive | 4826344 - 4827465 | 43495.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

