Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-met | Not Available | Not Available | Positive | 4690675 - 4690739 | Not Available |
| site-specific integrase | EZ449_20000 | Not Available | Positive | 4690886 - 4692025 | 44865.6 |
| helix-turn-helix domain-containing protein | EZ449_20005 | Not Available | Positive | 4693364 - 4693526 | 6403.88 |
| hypothetical protein | EZ449_20010 | Not Available | Positive | 4693535 - 4693744 | 7975.76 |
| Trna-ser | Not Available | Not Available | Positive | 4693882 - 4693968 | Not Available |
| yihy/virulence factor brkb family protein | EZ449_20020 | Not Available | Negative | 4694063 - 4695052 | 37608.9 |
| acyl-coa thioesterase | EZ449_20025 | Not Available | Negative | 4695059 - 4695469 | 16030.5 |
| endolytic transglycosylase mltg | EZ449_20030 | Not Available | Negative | 4695469 - 4696524 | 40032.6 |
| pasta domain-containing protein | EZ449_20035 | Not Available | Negative | 4696541 - 4697311 | 27821.6 |
| d-alanine--d-alanine ligase | EZ449_20040 | Not Available | Positive | 4697516 - 4698502 | 36531.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

