Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-dehydro-4-deoxy-d-glucuronate isomerase | EZ449_19840 | Not Available | Negative | 4645651 - 4646490 | 31346.2 |
| glucuronyl hydrolase | EZ449_19845 | Not Available | Negative | 4646678 - 4647784 | 42183.9 |
| chondroitinase | EZ449_19850 | Not Available | Negative | 4647896 - 4649977 | 78329.5 |
| glycoside hydrolase family 16 protein | EZ449_19855 | Not Available | Negative | 4649958 - 4650740 | 29918.7 |
| duf5017 domain-containing protein | EZ449_19860 | Not Available | Negative | 4650821 - 4651780 | 34559.2 |
| ragb/susd family nutrient uptake outer membrane protein | EZ449_19865 | Not Available | Negative | 4651767 - 4653671 | 69362.8 |
| tonb-dependent receptor | EZ449_19870 | Not Available | Negative | 4653693 - 4656845 | 115230.0 |
| hybrid sensor histidine kinase/response regulator | EZ449_19875 | Not Available | Positive | 4657092 - 4661153 | 153359.0 |
| hypothetical protein | EZ449_19880 | Not Available | Positive | 4661473 - 4662336 | 32662.4 |
| na+/h+ antiporter | EZ449_19885 | Not Available | Negative | 4662399 - 4663982 | 58874.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

