Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetratricopeptide repeat protein | EZ449_01640 | Not Available | Positive | 393227 - 394105 | 31072.4 |
| rne/rng family ribonuclease | EZ449_01645 | Not Available | Positive | 394389 - 395939 | 58784.6 |
| dna repair protein rada | EZ449_01650 | Not Available | Positive | 396307 - 397683 | 50275.7 |
| duf4920 domain-containing protein | EZ449_01655 | Not Available | Positive | 398021 - 398485 | 17057.1 |
| branched-chain amino acid aminotransferase | EZ449_01660 | Not Available | Negative | 398626 - 399690 | 39371.9 |
| tryptophan 2,3-dioxygenase | EZ449_01665 | Not Available | Negative | 399836 - 400801 | 37699.1 |
| chloride channel protein | EZ449_01670 | Not Available | Positive | 400944 - 402233 | 46078.9 |
| phosphoserine phosphatase | EZ449_01675 | Not Available | Negative | 402359 - 403660 | 49458.6 |
| sdr family nad(p)-dependent oxidoreductase | EZ449_01680 | Not Available | Negative | 403660 - 404622 | 35173.1 |
| arginase | EZ449_01685 | Not Available | Positive | 404694 - 405875 | 44693.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

