Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pseudouridine synthase | EZ449_16680 | Not Available | Negative | 3940167 - 3941789 | 61668.8 |
| lytic transglycosylase domain-containing protein | EZ449_16685 | Not Available | Positive | 3942055 - 3942837 | 29446.1 |
| ferredoxin--nadp reductase | EZ449_16690 | Not Available | Positive | 3943282 - 3944325 | 40060.0 |
| xre family transcriptional regulator | EZ449_16695 | Not Available | Negative | 3944533 - 3944847 | 11805.4 |
| type ii toxin-antitoxin system rele/pare family toxin | EZ449_16700 | Not Available | Negative | 3944847 - 3945200 | 14191.1 |
| hypothetical protein | EZ449_16705 | Not Available | Negative | 3945454 - 3946035 | 22513.0 |
| hypothetical protein | EZ449_16710 | Not Available | Positive | 3946190 - 3947149 | 37084.6 |
| excinuclease abc subunit uvra | EZ449_16715 | Not Available | Positive | 3947261 - 3950170 | 108369.0 |
| tatd family deoxyribonuclease | EZ449_16720 | Not Available | Positive | 3950302 - 3951069 | 28849.4 |
| type i asparaginase | EZ449_16725 | Not Available | Positive | 3951307 - 3952326 | 37852.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

