Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf695 domain-containing protein | EZ449_01295 | Not Available | Positive | 307835 - 308644 | 31279.5 |
| hypothetical protein | EZ449_01300 | Not Available | Positive | 308768 - 309034 | 9239.05 |
| cold-shock protein | EZ449_01305 | Not Available | Negative | 309136 - 309327 | 6904.04 |
| hypothetical protein | EZ449_01310 | Not Available | Negative | 309533 - 310096 | 21731.2 |
| pdz domain-containing protein | EZ449_01315 | Not Available | Negative | 310772 - 312328 | 54406.7 |
| diaminopimelate epimerase | EZ449_01320 | Not Available | Positive | 312794 - 313576 | 29112.3 |
| efflux rnd transporter periplasmic adaptor subunit | EZ449_01325 | Not Available | Positive | 314143 - 315312 | 41581.9 |
| efflux rnd transporter permease subunit | EZ449_01330 | Not Available | Positive | 315361 - 318540 | 114529.0 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 315970 - 316081 | Not Available |
| efflux transporter outer membrane subunit | EZ449_01335 | Not Available | Positive | 318552 - 319952 | 51180.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

