Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system higb family toxin | EZ449_12485 | Not Available | Positive | 2913124 - 2913417 | 11768.1 |
| helix-turn-helix domain-containing protein | EZ449_12490 | Not Available | Positive | 2913422 - 2913778 | 13735.8 |
| lysine--trna ligase | EZ449_12495 | Not Available | Positive | 2913842 - 2915551 | 64874.9 |
| hypothetical protein | EZ449_12500 | Not Available | Positive | 2915679 - 2915891 | 8360.8 |
| general stress protein | EZ449_12505 | Not Available | Negative | 2915921 - 2916475 | 20298.9 |
| duf2892 domain-containing protein | EZ449_12510 | Not Available | Negative | 2916619 - 2917158 | 20527.9 |
| thioredoxin | EZ449_12515 | Not Available | Positive | 2917274 - 2917789 | 19337.9 |
| uracil-dna glycosylase | EZ449_12520 | Not Available | Positive | 2917863 - 2918543 | 25389.1 |
| alpha/beta hydrolase | EZ449_12525 | Not Available | Positive | 2918543 - 2919235 | 26060.9 |
| lrp/asnc family transcriptional regulator | EZ449_12530 | Not Available | Negative | 2919270 - 2919740 | 18054.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

