Pedobacter frigidisoli strain RP-3-11

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter frigidisoli strain RP-3-11 is a notable member of the Pedobacter genus, characterized by the presence of flagella, which may contribute to its motility in various environments. This strain is documented with a single replicon, indicating a streamlined genetic organization that might be advantageous for its adaptability to different ecological niches. The strain has been assigned the accession number SJSN00000000.1, which serves as a reference for its genomic sequence and provides a basis for further research into its genetic and metabolic capabilities. The presence of flagella suggests that Pedobacter frigidisoli strain RP-3-11 can navigate through its surroundings, potentially enhancing its ability to colonize and thrive in diverse habitats, including cold environments, as implied by the species name "frigidisoli." Understanding the motility mechanisms of this strain could offer insights into its ecological role, particularly in nutrient cycling and interactions with other microorganisms in soil ecosystems. The ability to move and adapt to varying conditions may enable Pedobacter frigidisoli strain RP-3-11 to participate in the degradation of organic matter, contributing to soil health and nutrient availability. Overall, the traits of Pedobacter frigidisoli strain RP-3-11 underline its potential significance in ecological processes, especially in cold soil environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter frigidisoli
Strainstrain RP-3-11

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter frigidisoli strain RP-3-11 contig60, whole genome

Gene Summary

Adenine Count

1653740 bp

Thymine Count

1643646 bp

Guanine Count

977966 bp

Cytosine Count

998159 bp

Genome Length

5273566 bp

Protein-coding Genes

4365 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4293 family proteinEZ449_11075Not AvailableNegative2604929 - 260539617341.8
trna pseudouridine(38-40) synthase truaEZ449_11080Not AvailablePositive2605959 - 260670828500.9
abc transporter atp-binding proteinEZ449_11085Not AvailablePositive2606779 - 260854866600.5
isoaspartyl peptidase/l-asparaginaseEZ449_11090Not AvailablePositive2608605 - 260963036344.9
c4-dicarboxylate transporter dctaEZ449_11095Not AvailablePositive2609799 - 261106745507.3
23s rrna (adenine(1618)-n(6))-methyltransferase rlmfEZ449_11100Not AvailablePositive2611486 - 261248737738.8
vit family proteinEZ449_11105Not AvailableNegative2612643 - 261333224181.4
cupin domain-containing proteinEZ449_11110Not AvailableNegative2613417 - 261384515662.9
hypothetical proteinEZ449_11115Not AvailablePositive2614142 - 261478924353.3
succinate--coa ligase subunit alphaEZ449_11120Not AvailablePositive2615045 - 261591729824.4

Displaying genes 2191 – 2200 of 4428 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.