Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4293 family protein | EZ449_11075 | Not Available | Negative | 2604929 - 2605396 | 17341.8 |
| trna pseudouridine(38-40) synthase trua | EZ449_11080 | Not Available | Positive | 2605959 - 2606708 | 28500.9 |
| abc transporter atp-binding protein | EZ449_11085 | Not Available | Positive | 2606779 - 2608548 | 66600.5 |
| isoaspartyl peptidase/l-asparaginase | EZ449_11090 | Not Available | Positive | 2608605 - 2609630 | 36344.9 |
| c4-dicarboxylate transporter dcta | EZ449_11095 | Not Available | Positive | 2609799 - 2611067 | 45507.3 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | EZ449_11100 | Not Available | Positive | 2611486 - 2612487 | 37738.8 |
| vit family protein | EZ449_11105 | Not Available | Negative | 2612643 - 2613332 | 24181.4 |
| cupin domain-containing protein | EZ449_11110 | Not Available | Negative | 2613417 - 2613845 | 15662.9 |
| hypothetical protein | EZ449_11115 | Not Available | Positive | 2614142 - 2614789 | 24353.3 |
| succinate--coa ligase subunit alpha | EZ449_11120 | Not Available | Positive | 2615045 - 2615917 | 29824.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

