Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| giy-yig nuclease family protein | EZ449_09550 | Not Available | Negative | 2288480 - 2288782 | 12332.6 |
| restriction endonuclease subunit s | EZ449_09555 | Not Available | Negative | 2290224 - 2291399 | 44519.8 |
| sam-dependent dna methyltransferase | EZ449_09560 | Not Available | Negative | 2291396 - 2292880 | 55435.7 |
| hypothetical protein | EZ449_09565 | Not Available | Negative | 2293236 - 2293880 | 23416.0 |
| dna polymerase/3'-5' exonuclease polx | EZ449_09570 | Not Available | Positive | 2293949 - 2295625 | 62770.4 |
| duf4254 domain-containing protein | EZ449_09575 | Not Available | Positive | 2295739 - 2296341 | 23429.8 |
| lipopolysaccharide heptosyltransferase family protein | EZ449_09580 | Not Available | Positive | 2296450 - 2297481 | 38550.0 |
| histidine phosphatase family protein | EZ449_09585 | Not Available | Positive | 2297474 - 2297971 | 18692.0 |
| duf4290 domain-containing protein | EZ449_09590 | Not Available | Positive | 2298512 - 2299204 | 26670.5 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | EZ449_09595 | Not Available | Positive | 2299284 - 2300609 | 48146.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

