Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-(carboxyamino)imidazole ribonucleotide mutase | EZ449_08680 | Not Available | Positive | 2091058 - 2091573 | 17810.7 |
| yqge/algh family protein | EZ449_08685 | Not Available | Negative | 2091736 - 2092299 | 21087.9 |
| pyridoxamine 5'-phosphate oxidase | EZ449_08690 | Not Available | Positive | 2092346 - 2092996 | 25025.7 |
| 3-hydroxybutyryl-coa dehydrogenase | EZ449_08695 | Not Available | Positive | 2093317 - 2094210 | 32309.4 |
| holliday junction branch migration dna helicase ruvb | EZ449_08700 | Not Available | Positive | 2094242 - 2095264 | 37564.1 |
| gnat family n-acetyltransferase | EZ449_08705 | Not Available | Positive | 2095547 - 2097055 | 57553.1 |
| hypothetical protein | EZ449_08710 | Not Available | Negative | 2097271 - 2097477 | 7549.06 |
| trna epoxyqueuosine(34) reductase queg | EZ449_08715 | Not Available | Positive | 2097614 - 2098546 | 35422.1 |
| peptidase | EZ449_08720 | Not Available | Negative | 2098695 - 2100554 | 70183.1 |
| dna polymerase iii subunit epsilon | EZ449_08725 | Not Available | Negative | 2100603 - 2101559 | 36359.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

