Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidohydrolase | EZ449_08430 | Not Available | Negative | 2025165 - 2026331 | 43505.4 |
| Trna-thr | Not Available | Not Available | Positive | 2026455 - 2026527 | Not Available |
| hypothetical protein | EZ449_08440 | Not Available | Positive | 2027127 - 2027441 | 11239.5 |
| hypothetical protein | EZ449_08445 | Not Available | Positive | 2027549 - 2027863 | 11265.5 |
| sigma-54-dependent fis family transcriptional regulator | EZ449_08450 | Not Available | Positive | 2027933 - 2029264 | 49020.2 |
| response regulator | EZ449_08455 | Not Available | Negative | 2029499 - 2031976 | 94020.2 |
| yafy family transcriptional regulator | EZ449_08460 | Not Available | Positive | 2032225 - 2032914 | 26859.7 |
| dinb family protein | EZ449_08465 | Not Available | Positive | 2033168 - 2033728 | 21367.6 |
| 23s rrna pseudouridine(2604) synthase rluf | EZ449_08470 | Not Available | Positive | 2033825 - 2034796 | 36059.2 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | EZ449_08475 | Not Available | Positive | 2034885 - 2035940 | 39573.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

