Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hamp domain-containing histidine kinase | EZ449_06555 | Not Available | Positive | 1590725 - 1592080 | 51369.2 |
| hypothetical protein | EZ449_06560 | Not Available | Positive | 1592504 - 1593001 | 18846.6 |
| hypothetical protein | EZ449_06565 | Not Available | Positive | 1593027 - 1593953 | 35590.6 |
| hypothetical protein | EZ449_06570 | Not Available | Negative | 1594098 - 1594553 | 15584.5 |
| dna topoisomerase (atp-hydrolyzing) subunit b | EZ449_06575 | Not Available | Negative | 1594691 - 1596649 | 72182.9 |
| omph family outer membrane protein | EZ449_06580 | Not Available | Positive | 1597173 - 1597772 | 22289.2 |
| nucleoside deaminase | EZ449_06585 | Not Available | Positive | 1597839 - 1598321 | 18010.6 |
| ecsc family protein | EZ449_06590 | Not Available | Positive | 1598374 - 1599144 | 29545.2 |
| rna-binding s4 domain-containing protein | EZ449_06595 | Not Available | Negative | 1599141 - 1599539 | 15006.1 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | EZ449_06600 | Not Available | Positive | 1599719 - 1600540 | 29828.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

