Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exo-alpha-sialidase | EZ449_05795 | Not Available | Negative | 1386339 - 1387526 | 43373.3 |
| ragb/susd family nutrient uptake outer membrane protein | EZ449_05800 | Not Available | Negative | 1387538 - 1389064 | 58807.1 |
| tonb-dependent receptor | EZ449_05805 | Not Available | Negative | 1389075 - 1392122 | 111481.0 |
| hybrid sensor histidine kinase/response regulator | EZ449_05810 | Not Available | Positive | 1392272 - 1396270 | 151895.0 |
| pas domain s-box protein | EZ449_05815 | Not Available | Positive | 1397121 - 1400138 | 112821.0 |
| rna polymerase sigma factor | EZ449_05820 | Not Available | Positive | 1400886 - 1401398 | 19722.6 |
| tonb-dependent receptor | EZ449_05825 | Not Available | Negative | 1401757 - 1404222 | 91750.0 |
| helix-turn-helix domain-containing protein | EZ449_05830 | Not Available | Negative | 1404334 - 1405161 | 31100.4 |
| duf1080 domain-containing protein | EZ449_05835 | Not Available | Negative | 1405826 - 1408348 | 93623.8 |
| hypothetical protein | EZ449_05840 | Not Available | Negative | 1408425 - 1409108 | 25659.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

