Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter frigidisoli |
| Strain | strain RP-3-11 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1653740 bp
Thymine Count
1643646 bp
Guanine Count
977966 bp
Cytosine Count
998159 bp
Genome Length
5273566 bp
Protein-coding Genes
4365 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | EZ449_05040 | Not Available | Negative | 1216405 - 1218015 | 59882.9 |
| susc/raga family tonb-linked outer membrane protein | EZ449_05045 | Not Available | Negative | 1218024 - 1221107 | 112182.0 |
| metallophosphoesterase | EZ449_05050 | Not Available | Positive | 1221454 - 1223289 | 68349.4 |
| ragb/susd family nutrient uptake outer membrane protein | EZ449_05055 | Not Available | Negative | 1223363 - 1225207 | 69065.5 |
| susc/raga family tonb-linked outer membrane protein | EZ449_05060 | Not Available | Negative | 1225219 - 1228686 | 125676.0 |
| hypothetical protein | EZ449_05065 | Not Available | Positive | 1228933 - 1229889 | 35931.1 |
| hypothetical protein | EZ449_05070 | Not Available | Positive | 1230101 - 1230304 | 8019.68 |
| is1595 family transposase | EZ449_05075 | Not Available | Positive | 1230655 - 1231581 | 35442.9 |
| hypothetical protein | EZ449_05080 | Not Available | Negative | 1231824 - 1232156 | 12614.9 |
| xre family transcriptional regulator | EZ449_05085 | Not Available | Positive | 1232248 - 1232487 | 8982.96 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

