Citrobacter braakii strain HH5 21

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain HH5 21 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which enables motility. This strain has a single replicon, indicating a streamlined genetic architecture that may influence its adaptability and replication efficiency. C. braakii is known to inhabit a variety of hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of frog), and Oophaga histrionica (a poison dart frog). This diverse range of hosts suggests that C. braakii strain HH5 21 may have a versatile ecological role, potentially serving as a commensal organism in these species or, in some instances, contributing to disease. The presence of C. braakii in both aquatic and terrestrial ecosystems, as evidenced by its association with various amphibian and fish hosts, highlights its adaptability to different environments. The strain's accession number is SJSJ00000000.1, which provides a pathway for further genomic exploration and understanding of its biological functions. In summary, C. braakii strain HH5 21 exemplifies the adaptability of bacteria to diverse hosts and environments, which may play a crucial role in ecosystem dynamics and host-microbe interactions. Further studies on this strain could shed light on its ecological significance and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain HH5 21

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain HH5 21
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain HH5 21, whole genome shotgun sequence.

Gene Summary

Adenine Count

1168198 bp

Thymine Count

1170813 bp

Guanine Count

1263378 bp

Cytosine Count

1271281 bp

Genome Length

4873670 bp

Protein-coding Genes

4415 genes

Non-Coding Genes

248 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent dihydropyrimidine dehydrogenase subunit preaEY915_03080Not AvailablePositive607105 - 60834045082.3
galactose/methyl galactoside abc transporter permease mglcEY915_03085Not AvailableNegative608398 - 60940835620.4
galactose/methyl galactoside abc transporter atp-binding protein mglaEY915_03090Not AvailableNegative609424 - 61094456589.9
galactose/glucose abc transporter substrate-binding protein mglbEY915_03095Not AvailableNegative611016 - 61201435802.7
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive612604 - 612980Not Available
hth-type transcriptional regulator galsEY915_03100Not AvailableNegative612308 - 61333336963.8
duf418 family proteinEY915_03105Not AvailableNegative613478 - 61463543468.5
gtp cyclohydrolase i foleEY915_03110Not AvailableNegative614650 - 61531824879.1
s-formylglutathione hydrolaseEY915_03115Not AvailablePositive615640 - 61647631320.9
ligand-gated channel proteinEY915_03120Not AvailablePositive616825 - 61881073148.8

Displaying genes 791 – 800 of 4663 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.