Citrobacter braakii strain HH5 21

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain HH5 21 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which enables motility. This strain has a single replicon, indicating a streamlined genetic architecture that may influence its adaptability and replication efficiency. C. braakii is known to inhabit a variety of hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of frog), and Oophaga histrionica (a poison dart frog). This diverse range of hosts suggests that C. braakii strain HH5 21 may have a versatile ecological role, potentially serving as a commensal organism in these species or, in some instances, contributing to disease. The presence of C. braakii in both aquatic and terrestrial ecosystems, as evidenced by its association with various amphibian and fish hosts, highlights its adaptability to different environments. The strain's accession number is SJSJ00000000.1, which provides a pathway for further genomic exploration and understanding of its biological functions. In summary, C. braakii strain HH5 21 exemplifies the adaptability of bacteria to diverse hosts and environments, which may play a crucial role in ecosystem dynamics and host-microbe interactions. Further studies on this strain could shed light on its ecological significance and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain HH5 21

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain HH5 21
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain HH5 21, whole genome shotgun sequence.

Gene Summary

Adenine Count

1168198 bp

Thymine Count

1170813 bp

Guanine Count

1263378 bp

Cytosine Count

1271281 bp

Genome Length

4873670 bp

Protein-coding Genes

4415 genes

Non-Coding Genes

248 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidinol-phosphate transaminaseEY915_02425Not AvailablePositive463562 - 46464139927.8
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisbEY915_02430Not AvailablePositive464638 - 46570540189.3
imidazole glycerol phosphate synthase subunit hishEY915_02435Not AvailablePositive465705 - 46629521630.1
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseEY915_02440Not AvailablePositive466295 - 46703225845.9
imidazole glycerol phosphate synthase subunit hisfEY915_02445Not AvailablePositive467014 - 46779028484.0
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieEY915_02450Not AvailablePositive467784 - 46839522717.2
lps o-antigen chain length determinant protein wzzbEY915_02455Not AvailableNegative468452 - 46943536137.6
nad-dependent epimeraseEY915_02465Not AvailablePositive469830 - 47083437538.7
udp-glucose 6-dehydrogenaseEY915_02470Not AvailableNegative470894 - 47206043412.8
nadp-dependent phosphogluconate dehydrogenaseEY915_02475Not AvailableNegative472259 - 47366551440.1

Displaying genes 661 – 670 of 4663 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.