Citrobacter braakii strain HH5 21

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain HH5 21 is a Gram-negative bacterium characterized by its rod-shaped morphology and the presence of flagella, which enables motility. This strain has a single replicon, indicating a streamlined genetic architecture that may influence its adaptability and replication efficiency. C. braakii is known to inhabit a variety of hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of frog), and Oophaga histrionica (a poison dart frog). This diverse range of hosts suggests that C. braakii strain HH5 21 may have a versatile ecological role, potentially serving as a commensal organism in these species or, in some instances, contributing to disease. The presence of C. braakii in both aquatic and terrestrial ecosystems, as evidenced by its association with various amphibian and fish hosts, highlights its adaptability to different environments. The strain's accession number is SJSJ00000000.1, which provides a pathway for further genomic exploration and understanding of its biological functions. In summary, C. braakii strain HH5 21 exemplifies the adaptability of bacteria to diverse hosts and environments, which may play a crucial role in ecosystem dynamics and host-microbe interactions. Further studies on this strain could shed light on its ecological significance and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain HH5 21

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain HH5 21
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain HH5 21, whole genome shotgun sequence.

Gene Summary

Adenine Count

1168198 bp

Thymine Count

1170813 bp

Guanine Count

1263378 bp

Cytosine Count

1271281 bp

Genome Length

4873670 bp

Protein-coding Genes

4415 genes

Non-Coding Genes

248 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dutp diphosphataseEY915_10720Not AvailablePositive2202754 - 220320916122.4
nucleoid occlusion factor slmaEY915_10725Not AvailablePositive2203326 - 220392222904.9
orotate phosphoribosyltransferaseEY915_10730Not AvailableNegative2204010 - 220465123519.4
ribonuclease phEY915_10735Not AvailableNegative2204717 - 220543325259.3
yicc family proteinEY915_10740Not AvailablePositive2205559 - 220642233122.8
trimeric intracellular cation channel family proteinEY915_10745Not AvailablePositive2206680 - 220729722086.0
nad-dependent dna ligase ligbEY915_10750Not AvailableNegative2207294 - 220897363473.0
guanylate kinaseEY915_10755Not AvailablePositive2209235 - 220985823464.9
dna-directed rna polymerase subunit omegaEY915_10760Not AvailablePositive2209913 - 221018810237.2
bifunctional gtp diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolaseEY915_10765Not AvailablePositive2210207 - 221232179508.4

Displaying genes 2231 – 2240 of 4663 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.