Citrobacter braakii strain HH6 54

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain HH6 54 is a Gram-negative, rod-shaped bacterium that possesses flagella, indicating its motility. This strain has a single replicon, highlighting a streamlined genetic structure that is characteristic of many bacteria in the Enterobacteriaceae family to which it belongs. The strain has been isolated from various hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of frog), and Oophaga histrionica (a poison dart frog). This wide host range suggests that Citrobacter braakii strain HH6 54 may have versatile ecological roles and could be involved in diverse microbial interactions within different host environments. The accession number for this strain is SJSI00000000.1, which provides a reference for researchers interested in studying its genomic data. Understanding the ecological interactions of Citrobacter braakii, particularly in aquatic and amphibious ecosystems, may offer insights into its roles in nutrient cycling and its potential contributions to host health or disease. Such knowledge could prove valuable in fields ranging from environmental microbiology to aquaculture and conservation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain HH6 54

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain HH6 54
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain HH6 54, whole genome shotgun sequence.

Gene Summary

Adenine Count

1233958 bp

Thymine Count

1234109 bp

Guanine Count

1327671 bp

Cytosine Count

1333162 bp

Genome Length

5128900 bp

Protein-coding Genes

4805 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
short chain dehydrogenaseEY916_07945Not AvailablePositive1623151 - 162375321305.4
carbon starvation induced protein csidEY916_07950Not AvailablePositive1624014 - 162499137179.3
l-2-hydroxyglutarate oxidaseEY916_07955Not AvailablePositive1625011 - 162627946032.7
nadp-dependent succinate-semialdehyde dehydrogenase iEY916_07960Not AvailablePositive1626303 - 162775151808.1
4-aminobutyrate--2-oxoglutarate transaminaseEY916_07965Not AvailablePositive1627777 - 162906045735.3
gaba permeaseEY916_07970Not AvailablePositive1629214 - 163061450991.9
dna-binding transcriptional regulator csirEY916_07975Not AvailablePositive1630660 - 163134625954.6
peptidoglycan-binding protein lysmEY916_07980Not AvailableNegative1631359 - 163180816033.9
yqae/pmp3 family membrane proteinEY916_07985Not AvailableNegative1631905 - 16320635898.6
transcriptional regulatorEY916_07990Not AvailablePositive1632248 - 163254710603.0

Displaying genes 1561 – 1570 of 4933 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.