Citrobacter braakii strain HH6 54

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain HH6 54 is a Gram-negative, rod-shaped bacterium that possesses flagella, indicating its motility. This strain has a single replicon, highlighting a streamlined genetic structure that is characteristic of many bacteria in the Enterobacteriaceae family to which it belongs. The strain has been isolated from various hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of frog), and Oophaga histrionica (a poison dart frog). This wide host range suggests that Citrobacter braakii strain HH6 54 may have versatile ecological roles and could be involved in diverse microbial interactions within different host environments. The accession number for this strain is SJSI00000000.1, which provides a reference for researchers interested in studying its genomic data. Understanding the ecological interactions of Citrobacter braakii, particularly in aquatic and amphibious ecosystems, may offer insights into its roles in nutrient cycling and its potential contributions to host health or disease. Such knowledge could prove valuable in fields ranging from environmental microbiology to aquaculture and conservation efforts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain HH6 54

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain HH6 54
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain HH6 54, whole genome shotgun sequence.

Gene Summary

Adenine Count

1233958 bp

Thymine Count

1234109 bp

Guanine Count

1327671 bp

Cytosine Count

1333162 bp

Genome Length

5128900 bp

Protein-coding Genes

4805 genes

Non-Coding Genes

128 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nicotinamide mononucleotide deamidase-related protein yfayEY916_06070Not AvailableNegative1212985 - 121418744240.2
hypothetical proteinEY916_06075Not AvailableNegative1214267 - 121480918535.6
nucleoside triphosphatase nudiEY916_06080Not AvailablePositive1215128 - 121555316029.1
udp-4-amino-4-deoxy-l-arabinose aminotransferaseEY916_06085Not AvailablePositive1215845 - 121698441468.9
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseEY916_06090Not AvailablePositive1216987 - 121797036621.6
bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arnaEY916_06095Not AvailablePositive1217967 - 121994973876.2
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseEY916_06100Not AvailablePositive1219946 - 122084833327.8
lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferaseEY916_06105Not AvailablePositive1220845 - 122250362518.2
4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arneEY916_06110Not AvailablePositive1222500 - 122283512262.8
4-amino-4-deoxy-l-arabinose-phospho-udp flippaseEY916_06115Not AvailablePositive1222835 - 122322113728.3

Displaying genes 1191 – 1200 of 4933 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.