Citrobacter braakii strain HH7 15

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter braakii strain HH7 15 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella, which contribute to its motility. This strain is notable for having a single replicon, indicating a streamlined genomic structure. The strain has been identified in various hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), Ictalurus punctatus (channel catfish), Xenopus laevis (African clawed frog), Kurixalus bisacculus (a species of tree frog), and Oophaga histrionica (a species of poison dart frog). This diverse host range suggests that Citrobacter braakii strain HH7 15 may possess ecological versatility, allowing it to thrive in different environments and interact with various organisms. The accession number for this strain is SJSH00000000.1, which provides a reference for genomic data and further research. The presence of Citrobacter braakii in both aquatic and terrestrial vertebrates highlights its potential role in microbial ecosystems and its interactions within different biological contexts. Understanding the ecological implications of this strain can shed light on its significance in host-microbe dynamics and its adaptability to varied environmental niches.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter braakii
Strainstrain HH7 15

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter braakii strain HH7 15
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Ictalurus punctatus
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter braakii strain HH7 15, whole genome shotgun sequence.

Gene Summary

Adenine Count

1154990 bp

Thymine Count

1155713 bp

Guanine Count

1255865 bp

Cytosine Count

1258761 bp

Genome Length

4825329 bp

Protein-coding Genes

4392 genes

Non-Coding Genes

189 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iclr family transcriptional regulatorEY917_08560Not AvailableNegative1704926 - 170570829032.0
nicotinamide mononucleotide deamidase-related protein yfayEY917_08565Not AvailableNegative1705928 - 170713044157.1
hypothetical proteinEY917_08570Not AvailableNegative1707210 - 170775218535.6
nucleoside triphosphatase nudiEY917_08575Not AvailablePositive1708071 - 170849616029.1
udp-4-amino-4-deoxy-l-arabinose aminotransferaseEY917_08580Not AvailablePositive1708760 - 170989941509.9
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseEY917_08585Not AvailablePositive1709902 - 171088536621.6
bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arnaEY917_08590Not AvailablePositive1710882 - 171286473929.4
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseEY917_08595Not AvailablePositive1712861 - 171376333342.8
lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferaseEY917_08600Not AvailablePositive1713760 - 171541862534.3
4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arneEY917_08605Not AvailablePositive1715415 - 171575012262.8

Displaying genes 1731 – 1740 of 4581 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003187N-succinyl-(2S,6S)-2,6-diaminoheptanedioateC11H16N2O7Chemical structure of N-succinyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average288.257Da
Monoisotopic288.096848Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034237-phospho-2-dehydro-3-deoxy-D-arabino-heptonateC7H10O10PChemical structure of 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonateNot available
Average285.122Da
Monoisotopic285.0028043Da
BASm00034561-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamideNot available
Average573.2993Da
Monoisotopic573.0509381Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.