Citrobacter werkmanii strain ICR003007

Gram-negativeRodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter werkmanii strain ICR003007 is a Gram-negative, rod-shaped bacterium characterized as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon. This strain possesses flagella, which contributes to its mobility, allowing it to navigate its environment effectively. It falls within the mesophilic temperature range, suggesting optimal growth at moderate temperatures typically found in many natural and human-associated habitats. The strain has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. Notably, Citrobacter werkmanii ICR003007 is nonsporulating, meaning it does not form spores, which may limit its survival in extreme conditions compared to spore-forming bacteria. Understanding the ecological role of Citrobacter werkmanii ICR003007 can provide insights into its contribution to nutrient cycling, particularly in environments rich in organic matter. Its ability to metabolize various organic substrates positions it as a potential player in the degradation of pollutants or organic waste, further underscoring its ecological significance. The complete genomic data available under the accession SEJH00000000.1 could aid in future research aimed at exploring its metabolic pathways and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter werkmanii
Strainstrain ICR003007

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter werkmanii strain ICR003007
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Citrobacter werkmanii strain ICR003007

Gene Summary

Adenine Count

1207312 bp

Thymine Count

1203225 bp

Guanine Count

1309078 bp

Cytosine Count

1321511 bp

Genome Length

5055811 bp

Protein-coding Genes

4677 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
urea abc transporter permease subunit urtcEVY00_16560Not AvailableNegative3440474 - 344154738958.3
urea abc transporter permease subunit urtbEVY00_16565Not AvailableNegative3441547 - 344312156707.6
urea abc transporter substrate-binding proteinEVY00_16570Not AvailableNegative3443165 - 344443645989.7
hypothetical proteinEVY00_16575Not AvailablePositive3444923 - 34450183551.41
hypothetical proteinEVY00_16580Not AvailableNegative3445060 - 34451734129.22
diguanylate cyclaseEVY00_16585Not AvailableNegative3445302 - 344622835210.1
bifunctional nadp-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase ydfgEVY00_16595Not AvailablePositive3448576 - 344932227295.5
gntr family transcriptional regulatorEVY00_16600Not AvailablePositive3449409 - 345009526442.7
putative selenium delivery protein ydfzEVY00_16605Not AvailablePositive3450286 - 34504897314.88
mannitol dehydrogenase family proteinEVY00_16610Not AvailableNegative3450565 - 345203153593.6

Displaying genes 3361 – 3370 of 4888 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.