Citrobacter werkmanii strain ICR003007

Gram-negativeRodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter werkmanii strain ICR003007 is a Gram-negative, rod-shaped bacterium characterized as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon. This strain possesses flagella, which contributes to its mobility, allowing it to navigate its environment effectively. It falls within the mesophilic temperature range, suggesting optimal growth at moderate temperatures typically found in many natural and human-associated habitats. The strain has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. Notably, Citrobacter werkmanii ICR003007 is nonsporulating, meaning it does not form spores, which may limit its survival in extreme conditions compared to spore-forming bacteria. Understanding the ecological role of Citrobacter werkmanii ICR003007 can provide insights into its contribution to nutrient cycling, particularly in environments rich in organic matter. Its ability to metabolize various organic substrates positions it as a potential player in the degradation of pollutants or organic waste, further underscoring its ecological significance. The complete genomic data available under the accession SEJH00000000.1 could aid in future research aimed at exploring its metabolic pathways and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter werkmanii
Strainstrain ICR003007

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter werkmanii strain ICR003007
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Citrobacter werkmanii strain ICR003007

Gene Summary

Adenine Count

1207312 bp

Thymine Count

1203225 bp

Guanine Count

1309078 bp

Cytosine Count

1321511 bp

Genome Length

5055811 bp

Protein-coding Genes

4677 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorEVY00_16350Not AvailablePositive3402906 - 340379632536.8
atp-binding cassette domain-containing proteinEVY00_16355Not AvailableNegative3403810 - 340475135036.5
abc transporter atp-binding proteinEVY00_16360Not AvailableNegative3404744 - 340573035995.8
d,d-dipeptide abc transporter permeaseEVY00_16365Not AvailableNegative3405727 - 340662331997.9
abc transporter permeaseEVY00_16370Not AvailableNegative3406620 - 340764237441.4
abc transporter substrate-binding proteinEVY00_16375Not AvailableNegative3407687 - 340924957505.3
d-alanyl-d-alanine dipeptidaseEVY00_16380Not AvailableNegative3409265 - 340985221588.7
murr/rpir family transcriptional regulatorEVY00_16385Not AvailableNegative3409867 - 341073332472.7
acid-activated periplasmic chaperone hdebEVY00_16390Not AvailablePositive3411133 - 341146211927.2
methyl-accepting chemotaxis proteinEVY00_16395Not AvailablePositive3411618 - 341356169818.1

Displaying genes 3321 – 3330 of 4888 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.