Citrobacter werkmanii strain ICR003007

Gram-negativeRodMotile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter werkmanii strain ICR003007 is a Gram-negative, rod-shaped bacterium characterized as a chemoheterotroph, indicating its reliance on organic compounds for energy and carbon. This strain possesses flagella, which contributes to its mobility, allowing it to navigate its environment effectively. It falls within the mesophilic temperature range, suggesting optimal growth at moderate temperatures typically found in many natural and human-associated habitats. The strain has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. Notably, Citrobacter werkmanii ICR003007 is nonsporulating, meaning it does not form spores, which may limit its survival in extreme conditions compared to spore-forming bacteria. Understanding the ecological role of Citrobacter werkmanii ICR003007 can provide insights into its contribution to nutrient cycling, particularly in environments rich in organic matter. Its ability to metabolize various organic substrates positions it as a potential player in the degradation of pollutants or organic waste, further underscoring its ecological significance. The complete genomic data available under the accession SEJH00000000.1 could aid in future research aimed at exploring its metabolic pathways and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter werkmanii
Strainstrain ICR003007

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter werkmanii strain ICR003007
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Citrobacter werkmanii strain ICR003007

Gene Summary

Adenine Count

1207312 bp

Thymine Count

1203225 bp

Guanine Count

1309078 bp

Cytosine Count

1321511 bp

Genome Length

5055811 bp

Protein-coding Genes

4677 genes

Non-Coding Genes

206 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinylglutamate desuccinylaseEVY00_14025Not AvailableNegative2928978 - 292994335864.7
n-succinylarginine dihydrolaseEVY00_14030Not AvailableNegative2929936 - 293127949661.8
succinylglutamate-semialdehyde dehydrogenaseEVY00_14035Not AvailableNegative2931276 - 293275452869.1
arginine n-succinyltransferaseEVY00_14040Not AvailableNegative2932751 - 293378538487.1
aspartate aminotransferase family proteinEVY00_14045Not AvailableNegative2933782 - 293500243560.9
hypothetical proteinEVY00_14055Not AvailableNegative2935132 - 29353598910.83
exodeoxyribonuclease iiiEVY00_14060Not AvailablePositive2935447 - 293625330959.8
tvp38/tmem64 family proteinEVY00_14065Not AvailablePositive2936573 - 293713320070.2
tvp38/tmem64 family proteinEVY00_14070Not AvailablePositive2937130 - 293784025971.2
abc transporter substrate-binding proteinEVY00_14075Not AvailablePositive2937872 - 293904142833.9

Displaying genes 2921 – 2930 of 4888 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.