Flavobacterium cerinum strain 1E403

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium cerinum strain 1E403 is characterized as a rod-shaped bacterium that possesses flagella, indicating its potential for motility. This strain has been cataloged with a single replicon, suggesting a streamlined genomic organization that may influence its cellular processes and adaptability. The strain is associated with the accession number SBII00000000.1, which provides a reference for genomic information and further studies. Flavobacterium species are known for their ecological roles, particularly in aquatic environments where they contribute to the degradation of organic matter. The presence of flagella in strain 1E403 may enhance its ability to navigate through various substrates, facilitating its growth and nutrient acquisition. Additionally, the single replicon structure could indicate a simpler genomic regulation, which may confer advantages in specific ecological niches by allowing rapid responses to environmental changes. The ecological insight surrounding Flavobacterium cerinum strain 1E403 emphasizes its potential contribution to biogeochemical cycles, particularly in nutrient cycling within aquatic ecosystems. Its motility, facilitated by flagella, may play a crucial role in its interactions with other microorganisms and organic materials in its habitat, highlighting the importance of such bacteria in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium cerinum
Strainstrain 1E403

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium cerinum strain 1E403
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium cerinum strain 1E403 Scaffold29_1, whole genome

Gene Summary

Adenine Count

1294148 bp

Thymine Count

1302840 bp

Guanine Count

766159 bp

Cytosine Count

747353 bp

Genome Length

4112741 bp

Protein-coding Genes

3643 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEPI11_02640Not AvailablePositive572009 - 57234712496.0
hypothetical proteinEPI11_02645Not AvailablePositive572467 - 57330330706.9
cytochrome-c peroxidaseEPI11_02650Not AvailablePositive573365 - 57440839041.2
transporterEPI11_02655Not AvailablePositive574416 - 57536635128.6
lysine--trna ligaseEPI11_02660Not AvailableNegative575433 - 57712764324.0
lipoyl(octanoyl) transferase lipbEPI11_02665Not AvailablePositive577285 - 57801027438.0
ribonuclease hiiEPI11_02670Not AvailableNegative578005 - 57862223548.5
t9ss type a sorting domain-containing proteinEPI11_02675Not AvailablePositive578837 - 58075667654.9
susc/raga family tonb-linked outer membrane proteinEPI11_02680Not AvailablePositive581028 - 584099112384.0
ragb/susd family nutrient uptake outer membrane proteinEPI11_02685Not AvailablePositive584117 - 58564355392.4

Displaying genes 561 – 570 of 3746 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.