Flavobacterium cerinum strain 1E403

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium cerinum strain 1E403 is characterized as a rod-shaped bacterium that possesses flagella, indicating its potential for motility. This strain has been cataloged with a single replicon, suggesting a streamlined genomic organization that may influence its cellular processes and adaptability. The strain is associated with the accession number SBII00000000.1, which provides a reference for genomic information and further studies. Flavobacterium species are known for their ecological roles, particularly in aquatic environments where they contribute to the degradation of organic matter. The presence of flagella in strain 1E403 may enhance its ability to navigate through various substrates, facilitating its growth and nutrient acquisition. Additionally, the single replicon structure could indicate a simpler genomic regulation, which may confer advantages in specific ecological niches by allowing rapid responses to environmental changes. The ecological insight surrounding Flavobacterium cerinum strain 1E403 emphasizes its potential contribution to biogeochemical cycles, particularly in nutrient cycling within aquatic ecosystems. Its motility, facilitated by flagella, may play a crucial role in its interactions with other microorganisms and organic materials in its habitat, highlighting the importance of such bacteria in maintaining ecosystem health and function.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium cerinum
Strainstrain 1E403

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium cerinum strain 1E403
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium cerinum strain 1E403 Scaffold29_1, whole genome

Gene Summary

Adenine Count

1294148 bp

Thymine Count

1302840 bp

Guanine Count

766159 bp

Cytosine Count

747353 bp

Genome Length

4112741 bp

Protein-coding Genes

3643 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tryptophan 2,3-dioxygenaseEPI11_11980Not AvailableNegative2515887 - 251681937089.3
duf3108 domain-containing proteinEPI11_11985Not AvailableNegative2516824 - 251759129213.1
4-hydroxyphenylpyruvate dioxygenaseEPI11_11990Not AvailableNegative2517897 - 251905743713.0
homogentisate 1,2-dioxygenaseEPI11_11995Not AvailableNegative2519189 - 252034644580.9
amino acid permeaseEPI11_12000Not AvailableNegative2520658 - 252230459204.3
patatinEPI11_12005Not AvailableNegative2522572 - 252477082131.7
excinuclease abc subunit uvrcEPI11_12010Not AvailableNegative2524774 - 252657369172.2
succinylglutamate desuccinylase/aspartoacylase family proteinEPI11_12015Not AvailablePositive2527073 - 252803835721.6
5-formyltetrahydrofolate cyclo-ligaseEPI11_12020Not AvailablePositive2528080 - 252864922174.8
lipoprotein signal peptidaseEPI11_12025Not AvailableNegative2528719 - 252931522392.6

Displaying genes 2411 – 2420 of 3746 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.