Pedobacter chitinilyticus strain CM134L-2

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter chitinilyticus strain CM134L-2 is characterized by the presence of flagella, which suggests that it is motile. This motility can be beneficial in various ecological contexts, allowing the bacterium to navigate its environment effectively. The strain has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in resource utilization. The strain's genetic information is cataloged under the accession number SAYW00000000.1, providing a reference for researchers interested in its genomic characteristics and potential applications. As a member of the Pedobacter genus, this bacterium is likely involved in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. This ability to degrade chitin is ecologically significant, as it contributes to nutrient cycling in various ecosystems, promoting the breakdown of organic matter and enhancing soil health. Overall, the motility provided by flagella, combined with its specialized enzymatic capabilities, positions Pedobacter chitinilyticus strain CM134L-2 as an important player in the decomposition processes within its habitat, underscoring its role in the ecological balance and nutrient dynamics of its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter chitinilyticus
Strainstrain CM134L-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter chitinilyticus strain CM134L-2 contig014, whole genome

Gene Summary

Adenine Count

1541122 bp

Thymine Count

1530322 bp

Guanine Count

982715 bp

Cytosine Count

998084 bp

Genome Length

5052900 bp

Protein-coding Genes

4066 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dnrlre domain-containing proteinDPV69_04450Not AvailableNegative1065679 - 106717254469.6
ragb/susd family nutrient uptake outer membrane proteinDPV69_04455Not AvailableNegative1067188 - 106861253556.9
tonb-dependent receptorDPV69_04460Not AvailableNegative1068617 - 1071718113272.0
laci family dna-binding transcriptional regulatorDPV69_04465Not AvailableNegative1072258 - 107331940473.6
ribulokinaseDPV69_04470Not AvailableNegative1073503 - 107513458974.7
fucose isomeraseDPV69_04475Not AvailableNegative1075137 - 107675960160.6
arac family transcriptional regulatorDPV69_04480Not AvailablePositive1077027 - 107789633721.6
gaf domain-containing proteinDPV69_04485Not AvailableNegative1077901 - 108013883470.5
heme oxygenaseDPV69_04490Not AvailableNegative1080211 - 108075920197.4
pas domain s-box proteinDPV69_04495Not AvailablePositive1080913 - 108354998773.9

Displaying genes 881 – 890 of 4115 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.