Pedobacter chitinilyticus strain CM134L-2

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter chitinilyticus strain CM134L-2 is characterized by the presence of flagella, which suggests that it is motile. This motility can be beneficial in various ecological contexts, allowing the bacterium to navigate its environment effectively. The strain has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in resource utilization. The strain's genetic information is cataloged under the accession number SAYW00000000.1, providing a reference for researchers interested in its genomic characteristics and potential applications. As a member of the Pedobacter genus, this bacterium is likely involved in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. This ability to degrade chitin is ecologically significant, as it contributes to nutrient cycling in various ecosystems, promoting the breakdown of organic matter and enhancing soil health. Overall, the motility provided by flagella, combined with its specialized enzymatic capabilities, positions Pedobacter chitinilyticus strain CM134L-2 as an important player in the decomposition processes within its habitat, underscoring its role in the ecological balance and nutrient dynamics of its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter chitinilyticus
Strainstrain CM134L-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter chitinilyticus strain CM134L-2 contig014, whole genome

Gene Summary

Adenine Count

1541122 bp

Thymine Count

1530322 bp

Guanine Count

982715 bp

Cytosine Count

998084 bp

Genome Length

5052900 bp

Protein-coding Genes

4066 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rhomboid family intramembrane serine proteaseDPV69_16435Not AvailablePositive3994998 - 399583130745.8
endonucleaseDPV69_16440Not AvailablePositive3995831 - 399696443525.3
cysteine--trna ligaseDPV69_16445Not AvailablePositive3996991 - 399845154993.7
m28 family peptidaseDPV69_16450Not AvailablePositive3998492 - 399948136573.8
nuclear transport factor 2 family proteinDPV69_16455Not AvailablePositive3999594 - 400046031995.1
glycerophosphodiester phosphodiesteraseDPV69_16460Not AvailablePositive4000719 - 400160933760.2
hypothetical proteinDPV69_16465Not AvailableNegative4001708 - 40019177668.17
copper-translocating p-type atpaseDPV69_16470Not AvailableNegative4001966 - 400438987254.3
phenylalanyl-trna synthetase subunit alphaDPV69_16475Not AvailablePositive4004567 - 40046773972.78
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdDPV69_16480Not AvailablePositive4004802 - 400623253724.4

Displaying genes 3261 – 3270 of 4115 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.