Pedobacter chitinilyticus strain CM134L-2

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter chitinilyticus strain CM134L-2 is characterized by the presence of flagella, which suggests that it is motile. This motility can be beneficial in various ecological contexts, allowing the bacterium to navigate its environment effectively. The strain has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in resource utilization. The strain's genetic information is cataloged under the accession number SAYW00000000.1, providing a reference for researchers interested in its genomic characteristics and potential applications. As a member of the Pedobacter genus, this bacterium is likely involved in the decomposition of chitin, a biopolymer found in the exoskeletons of arthropods and the cell walls of fungi. This ability to degrade chitin is ecologically significant, as it contributes to nutrient cycling in various ecosystems, promoting the breakdown of organic matter and enhancing soil health. Overall, the motility provided by flagella, combined with its specialized enzymatic capabilities, positions Pedobacter chitinilyticus strain CM134L-2 as an important player in the decomposition processes within its habitat, underscoring its role in the ecological balance and nutrient dynamics of its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter chitinilyticus
Strainstrain CM134L-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter chitinilyticus strain CM134L-2 contig014, whole genome

Gene Summary

Adenine Count

1541122 bp

Thymine Count

1530322 bp

Guanine Count

982715 bp

Cytosine Count

998084 bp

Genome Length

5052900 bp

Protein-coding Genes

4066 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gxxexxy proteinDPV69_10100Not AvailableNegative2464896 - 246526714551.9
dead/deah box helicaseDPV69_10105Not AvailableNegative2465337 - 246649743390.1
succinate dehydrogenase cytochrome b subunitDPV69_10110Not AvailablePositive2467107 - 246777525124.3
fumarate reductase/succinate dehydrogenase flavoprotein subunitDPV69_10115Not AvailablePositive2467808 - 246978773334.8
succinate dehydrogenase/fumarate reductase iron-sulfur subunitDPV69_10120Not AvailablePositive2469863 - 247063327892.4
ytxh domain-containing proteinDPV69_10125Not AvailablePositive2471128 - 24713347348.97
methyltransferase domain-containing proteinDPV69_10130Not AvailablePositive2471468 - 247215426158.5
peptidase tDPV69_10135Not AvailableNegative2472232 - 247348545586.2
hypothetical proteinDPV69_10140Not AvailablePositive2473560 - 247427326626.5
hypothetical proteinDPV69_10145Not AvailablePositive2474362 - 247610466782.6

Displaying genes 2001 – 2010 of 4115 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.