Flavobacterium macacae strain YIM 102600

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium macacae strain YIM 102600 is characterized as a rod-shaped bacterium with the presence of flagella, allowing for motility. The strain has a single replicon, which is a key feature in understanding its genetic organization and replication. Its genomic data can be accessed through the accession number RQVR00000000.1, providing a resource for researchers interested in its genetic makeup and potential applications. As a member of the Flavobacterium genus, F. macacae is likely to play a role in various ecological niches, particularly in aquatic environments where members of this group are commonly found. Flavobacterium species are often associated with the degradation of organic matter, indicating a potential role in nutrient cycling within their ecosystems. This ability to break down complex organic materials may contribute to the overall health of the environments they inhabit, as well as influencing the dynamics of microbial communities. Understanding the specific traits of Flavobacterium macacae strain YIM 102600 can enhance our comprehension of its ecological functions and potential applications in biotechnology, especially in bioremediation or environmental monitoring efforts. As research progresses, the insights gained from this strain may reveal further significance in microbial ecology and its contributions to ecosystem services.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium macacae
Strainstrain YIM 102600

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium macacae strain YIM 102600
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium macacae strain YIM 102600 Scaffold56, whole genome

Gene Summary

Adenine Count

1060770 bp

Thymine Count

1073443 bp

Guanine Count

612808 bp

Cytosine Count

621548 bp

Genome Length

3372979 bp

Protein-coding Genes

3013 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xre family transcriptional regulatorEG849_15015Not AvailablePositive3270894 - 32711278508.3
type vi secretion system tip protein vgrgEG849_15020Not AvailablePositive3271839 - 327361464185.6
tetratricopeptide repeat proteinEG849_15025Not AvailablePositive3273617 - 327495451462.3
type iv secretion protein rhsEG849_15030Not AvailablePositive3274976 - 3278161121038.0
hypothetical proteinEG849_15035Not AvailablePositive3278197 - 32784518416.92
hypothetical proteinEG849_15040Not AvailablePositive3278768 - 327912714040.1
hypothetical proteinEG849_15045Not AvailablePositive3279189 - 32794469335.07
hypothetical proteinEG849_15050Not AvailableNegative3279461 - 328033034204.2
xre family transcriptional regulatorEG849_15055Not AvailableNegative3280596 - 328099414830.7
type ii toxin-antitoxin system hica family toxinEG849_15060Not AvailableNegative3281055 - 32812316689.12

Displaying genes 2971 – 2980 of 3062 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.