Flavobacterium macacae strain YIM 102600

Rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium macacae strain YIM 102600 is characterized as a rod-shaped bacterium with the presence of flagella, allowing for motility. The strain has a single replicon, which is a key feature in understanding its genetic organization and replication. Its genomic data can be accessed through the accession number RQVR00000000.1, providing a resource for researchers interested in its genetic makeup and potential applications. As a member of the Flavobacterium genus, F. macacae is likely to play a role in various ecological niches, particularly in aquatic environments where members of this group are commonly found. Flavobacterium species are often associated with the degradation of organic matter, indicating a potential role in nutrient cycling within their ecosystems. This ability to break down complex organic materials may contribute to the overall health of the environments they inhabit, as well as influencing the dynamics of microbial communities. Understanding the specific traits of Flavobacterium macacae strain YIM 102600 can enhance our comprehension of its ecological functions and potential applications in biotechnology, especially in bioremediation or environmental monitoring efforts. As research progresses, the insights gained from this strain may reveal further significance in microbial ecology and its contributions to ecosystem services.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium macacae
Strainstrain YIM 102600

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium macacae strain YIM 102600
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium macacae strain YIM 102600 Scaffold56, whole genome

Gene Summary

Adenine Count

1060770 bp

Thymine Count

1073443 bp

Guanine Count

612808 bp

Cytosine Count

621548 bp

Genome Length

3372979 bp

Protein-coding Genes

3013 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deda family proteinEG849_12080Not AvailablePositive2629022 - 262971726465.7
tonb-dependent receptorEG849_12085Not AvailableNegative2629964 - 263264898478.3
glucose-6-phosphate isomeraseEG849_12090Not AvailableNegative2632861 - 263450761599.0
m23 family peptidaseEG849_12095Not AvailableNegative2634566 - 263581047121.6
tryptophan 2,3-dioxygenaseEG849_12100Not AvailableNegative2635827 - 263676537271.3
duf3108 domain-containing proteinEG849_12105Not AvailableNegative2636776 - 263754929528.6
4-hydroxyphenylpyruvate dioxygenaseEG849_12110Not AvailableNegative2637847 - 263900743812.9
homogentisate 1,2-dioxygenaseEG849_12115Not AvailableNegative2639140 - 264029744372.8
amino acid permeaseEG849_12120Not AvailableNegative2640585 - 264202451542.3
patatinEG849_12125Not AvailableNegative2642126 - 264433983450.6

Displaying genes 2401 – 2410 of 3062 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.