Paenimyroides viscosum strain YIM 102796

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Paenimyroides viscosum strain YIM 102796 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for possessing a single replicon, which is significant in understanding its genomic structure and replication processes. The strain is cataloged under the accession number RQTJ00000000.1, facilitating its identification and further study within microbial databases. The classification of Paenimyroides viscosum as a Gram-negative organism suggests that it has a distinctive cell wall structure, which typically includes an outer membrane containing lipopolysaccharides. This trait can contribute to its interactions with the environment, including its responses to antibiotics and its overall ecological niche. In the context of its biological and ecological significance, the characteristics of Paenimyroides viscosum strain YIM 102796 may influence its adaptability in various habitats. Gram-negative bacteria are often found in diverse environments, and their ability to thrive in different conditions can provide insights into microbial ecology and evolutionary biology. Understanding the traits of this strain may also contribute to research in microbial physiology, potential biotechnological applications, or ecological interactions within its native ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides viscosum
Strainstrain YIM 102796

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenimyroides viscosum strain YIM 102796 Scaffold86, whole genome

Gene Summary

Adenine Count

995389 bp

Thymine Count

996300 bp

Guanine Count

506553 bp

Cytosine Count

508409 bp

Genome Length

3013749 bp

Protein-coding Genes

2823 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
single-stranded-dna-specific exonuclease recjEG242_09120Not AvailableNegative1820731 - 182242563781.3
hypothetical proteinEG242_09125Not AvailablePositive1822581 - 182324926415.3
osmc family peroxiredoxinEG242_09130Not AvailableNegative1823327 - 182374915515.6
16s rrna (cytidine(1402)-2'-o)-methyltransferaseEG242_09135Not AvailableNegative1823742 - 182443725924.4
hypothetical proteinEG242_09140Not AvailableNegative1824591 - 182556537248.1
thymidine kinaseEG242_09145Not AvailablePositive1825666 - 182625021728.9
hypothetical proteinEG242_09150Not AvailableNegative1826252 - 182778757923.9
enoyl-coa hydratase/isomerase family proteinEG242_09155Not AvailablePositive1827887 - 182864827518.8
hypothetical proteinEG242_09160Not AvailableNegative1828983 - 182952521294.5
6-carboxytetrahydropterin synthaseEG242_09165Not AvailablePositive1829597 - 183004917429.6

Displaying genes 1801 – 1810 of 2901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.