Paenimyroides viscosum strain YIM 102796

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Paenimyroides

Description

Paenimyroides viscosum strain YIM 102796 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for possessing a single replicon, which is significant in understanding its genomic structure and replication processes. The strain is cataloged under the accession number RQTJ00000000.1, facilitating its identification and further study within microbial databases. The classification of Paenimyroides viscosum as a Gram-negative organism suggests that it has a distinctive cell wall structure, which typically includes an outer membrane containing lipopolysaccharides. This trait can contribute to its interactions with the environment, including its responses to antibiotics and its overall ecological niche. In the context of its biological and ecological significance, the characteristics of Paenimyroides viscosum strain YIM 102796 may influence its adaptability in various habitats. Gram-negative bacteria are often found in diverse environments, and their ability to thrive in different conditions can provide insights into microbial ecology and evolutionary biology. Understanding the traits of this strain may also contribute to research in microbial physiology, potential biotechnological applications, or ecological interactions within its native ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPaenimyroides
SpeciesPaenimyroides viscosum
Strainstrain YIM 102796

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenimyroides viscosum strain YIM 102796 Scaffold86, whole genome

Gene Summary

Adenine Count

995389 bp

Thymine Count

996300 bp

Guanine Count

506553 bp

Cytosine Count

508409 bp

Genome Length

3013749 bp

Protein-coding Genes

2823 genes

Non-Coding Genes

78 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycoside hydrolase family 25 proteinEG242_08715Not AvailablePositive1737427 - 173827833979.7
duf417 domain-containing proteinEG242_08720Not AvailableNegative1738283 - 173887921935.3
abc transporter permeaseEG242_08725Not AvailableNegative1739366 - 174046940201.9
pdz domain-containing proteinEG242_08730Not AvailableNegative1740618 - 174276281836.5
5'/3'-nucleotidase sureEG242_08735Not AvailablePositive1742911 - 174367827932.6
hypothetical proteinEG242_08740Not AvailablePositive1743666 - 174395310787.6
lipid-a-disaccharide synthaseEG242_08745Not AvailablePositive1743953 - 174507142660.9
nlpc/p60 family proteinEG242_08750Not AvailablePositive1745155 - 174576622583.0
comec family competence proteinEG242_08755Not AvailablePositive1745806 - 174779476667.0
thioredoxin family proteinEG242_08760Not AvailableNegative1747785 - 174824017152.8

Displaying genes 1721 – 1730 of 2901 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.