Parapedobacter sp.

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter sp. is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which is indicative of its genetic structure. The genomic information for Parapedobacter sp. can be accessed through the accession number RDDX00000000.1. The classification of Parapedobacter sp. within the broader context of microbiology highlights its potential ecological roles. As a member of the bacterial domain, this organism may contribute to various ecological processes, including nutrient cycling and the degradation of organic materials. While specific ecological interactions or applications have not been detailed, the presence of Gram-negative bacteria in diverse environments suggests a potential for involvement in complex microbial communities. Understanding the traits of Parapedobacter sp. contributes to the broader knowledge of microbial diversity and functionality. Its classification as a Gram-negative rod and the possession of a single replicon may provide insights into its metabolic capabilities and adaptive strategies in various habitats. These characteristics can be crucial for researchers looking to explore its ecological significance or potential applications in biotechnology and environmental science.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Parapedobacter sp. isolate BP8.3

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4228 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
had family phosphataseEAS52_25110Not AvailableNegative5181551 - 518218924449.0
Trna-metNot AvailableNot AvailablePositive5182430 - 5182506Not Available
trna lysidine(34) synthetase tilsEAS52_25125Not AvailableNegative5183331 - 518410829762.1
hypothetical proteinEAS52_25130Not AvailablePositive5184180 - 518671793689.6
sdr family nad(p)-dependent oxidoreductaseEAS52_25135Not AvailableNegative5186870 - 518760127232.0
cold shock domain-containing proteinEAS52_25140Not AvailablePositive5187791 - 518825217160.2
four-helix bundle copper-binding proteinEAS52_25145Not AvailablePositive5188509 - 518885612742.4
gluconate 2-dehydrogenase subunit 3 family proteinEAS52_25150Not AvailableNegative5188858 - 518948722346.7
gmc family oxidoreductaseEAS52_25155Not AvailableNegative5189520 - 519125663712.6
rdgb/ham1 family non-canonical purine ntp pyrophosphataseEAS52_25160Not AvailableNegative5191445 - 519202321365.1

Displaying genes 4931 – 4940 of 5215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.