Parapedobacter sp.

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter sp. is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which is indicative of its genetic structure. The genomic information for Parapedobacter sp. can be accessed through the accession number RDDX00000000.1. The classification of Parapedobacter sp. within the broader context of microbiology highlights its potential ecological roles. As a member of the bacterial domain, this organism may contribute to various ecological processes, including nutrient cycling and the degradation of organic materials. While specific ecological interactions or applications have not been detailed, the presence of Gram-negative bacteria in diverse environments suggests a potential for involvement in complex microbial communities. Understanding the traits of Parapedobacter sp. contributes to the broader knowledge of microbial diversity and functionality. Its classification as a Gram-negative rod and the possession of a single replicon may provide insights into its metabolic capabilities and adaptive strategies in various habitats. These characteristics can be crucial for researchers looking to explore its ecological significance or potential applications in biotechnology and environmental science.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Parapedobacter sp. isolate BP8.3

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4228 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinEAS52_00895Not AvailableNegative178692 - 17962236143.2
hypothetical proteinEAS52_00900Not AvailableNegative179681 - 18115654320.2
lamg domain-containing proteinEAS52_00905Not AvailableNegative181189 - 18299166766.4
ragb/susd family nutrient uptake outer membrane proteinEAS52_00910Not AvailableNegative183004 - 18480067550.4
susc/raga family tonb-linked outer membrane proteinEAS52_00915Not AvailableNegative184818 - 188177123438.0
duf4974 domain-containing proteinEAS52_00920Not AvailableNegative188344 - 18872113812.5
duf4143 domain-containing proteinEAS52_00925Not AvailablePositive188722 - 18952730718.6
nad-dependent epimerase/dehydratase family proteinEAS52_00930Not AvailableNegative189694 - 19071638591.9
arginine decarboxylaseEAS52_00935Not AvailableNegative190728 - 19211954318.8
arginine--trna ligaseEAS52_00940Not AvailablePositive192309 - 19409367776.9

Displaying genes 181 – 190 of 5215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.