Parapedobacter sp.

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter sp. is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism possesses a single replicon, which is indicative of its genetic structure. The genomic information for Parapedobacter sp. can be accessed through the accession number RDDX00000000.1. The classification of Parapedobacter sp. within the broader context of microbiology highlights its potential ecological roles. As a member of the bacterial domain, this organism may contribute to various ecological processes, including nutrient cycling and the degradation of organic materials. While specific ecological interactions or applications have not been detailed, the presence of Gram-negative bacteria in diverse environments suggests a potential for involvement in complex microbial communities. Understanding the traits of Parapedobacter sp. contributes to the broader knowledge of microbial diversity and functionality. Its classification as a Gram-negative rod and the possession of a single replicon may provide insights into its metabolic capabilities and adaptive strategies in various habitats. These characteristics can be crucial for researchers looking to explore its ecological significance or potential applications in biotechnology and environmental science.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter sp.
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Parapedobacter sp. isolate BP8.3

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4228 genes

Non-Coding Genes

36 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gfo/idh/moca family oxidoreductaseEAS52_00595Not AvailableNegative116941 - 11746919270.5
ragb/susd family nutrient uptake outer membrane proteinEAS52_00600Not AvailablePositive117470 - 11924267257.0
hypothetical proteinEAS52_00605Not AvailableNegative119324 - 12030736383.8
hypothetical proteinEAS52_00610Not AvailableNegative120356 - 1205958695.24
gfo/idh/moca family oxidoreductaseEAS52_00615Not AvailableNegative120633 - 12114519345.8
glycoside hydrolase family 28 proteinEAS52_00620Not AvailableNegative121188 - 12284060676.8
rhamnogalacturonan acetylesteraseEAS52_00625Not AvailableNegative122867 - 12361328169.7
leucine-rich repeat domain-containing proteinEAS52_00630Not AvailableNegative123622 - 12454534164.9
hypothetical proteinEAS52_00635Not AvailableNegative124547 - 12496115758.5
3d-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)EAS52_00640Not AvailablePositive124962 - 12655757069.7

Displaying genes 121 – 130 of 5215 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.