Citrobacter amalonaticus strain ca_0067

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain ca_0067 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This strain possesses flagella, which contribute to its motility. It has a single replicon, indicating a streamlined genomic structure. This bacterium is primarily found in the gut of Homo sapiens, suggesting a role in the human microbiome. The presence of Citrobacter amalonaticus in the gut may have implications for human health, as gut microbiota is known to influence various physiological processes, including digestion and immune response. With the accession number RCYA00000000.1, strain ca_0067 is part of a broader classification within the Citrobacter genus, which includes various species known for their interactions with human hosts. The ecological role of Citrobacter amalonaticus in the gut environment may involve the breakdown of nutrients and the modulation of gut health. Understanding the characteristics of Citrobacter amalonaticus strain ca_0067 can provide insights into its potential contributions to the gut microbiome and its significance in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain ca_0067

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain ca_0067
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain ca_0067 Scaffold_0029, whole

Gene Summary

Adenine Count

1134336 bp

Thymine Count

1139730 bp

Guanine Count

1275514 bp

Cytosine Count

1326850 bp

Genome Length

4876430 bp

Protein-coding Genes

4333 genes

Non-Coding Genes

406 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
autotransporter outer membrane beta-barrel domain-containing proteinEAJ18_21820Not AvailablePositive4470064 - 447265291194.8
duf1161 domain-containing proteinEAJ18_21825Not AvailablePositive4472822 - 447313010820.7
dimethyl sulfoxide reductase subunit aEAJ18_21830Not AvailablePositive4473402 - 447583789960.8
dimethyl sulfoxide reductase subunit bEAJ18_21835Not AvailablePositive4475848 - 44760116272.22
menaquinone-dependent protoporphyrinogen ix dehydrogenaseEAJ18_21840Not AvailableNegative4476135 - 447668021128.4
trk system potassium transporter trkhEAJ18_21845Not AvailableNegative4476692 - 447814352933.9
impact family proteinEAJ18_21850Not AvailableNegative4478182 - 447879621770.1
xaa-pro dipeptidaseEAJ18_21855Not AvailableNegative4478796 - 448012750220.8
fatty acid oxidation complex subunit alpha fadbEAJ18_21860Not AvailablePositive4480318 - 448250779597.5
acetyl-coa c-acyltransferase fadaEAJ18_21865Not AvailablePositive4482517 - 448368040832.7

Displaying genes 4351 – 4360 of 4739 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.