Citrobacter amalonaticus strain ca_0067

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain ca_0067 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This strain possesses flagella, which contribute to its motility. It has a single replicon, indicating a streamlined genomic structure. This bacterium is primarily found in the gut of Homo sapiens, suggesting a role in the human microbiome. The presence of Citrobacter amalonaticus in the gut may have implications for human health, as gut microbiota is known to influence various physiological processes, including digestion and immune response. With the accession number RCYA00000000.1, strain ca_0067 is part of a broader classification within the Citrobacter genus, which includes various species known for their interactions with human hosts. The ecological role of Citrobacter amalonaticus in the gut environment may involve the breakdown of nutrients and the modulation of gut health. Understanding the characteristics of Citrobacter amalonaticus strain ca_0067 can provide insights into its potential contributions to the gut microbiome and its significance in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain ca_0067

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain ca_0067
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain ca_0067 Scaffold_0029, whole

Gene Summary

Adenine Count

1134336 bp

Thymine Count

1139730 bp

Guanine Count

1275514 bp

Cytosine Count

1326850 bp

Genome Length

4876430 bp

Protein-coding Genes

4333 genes

Non-Coding Genes

406 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
undecaprenyl-phosphate 4-deoxy-4-formamido-l-arabinose transferaseEAJ18_19000Not AvailablePositive3884348 - 388532836594.6
bifunctional udp-4-amino-4-deoxy-l-arabinose formyltransferase/udp-glucuronic acid oxidase arnaEAJ18_19005Not AvailablePositive3885328 - 388731074047.5
4-deoxy-4-formamido-l-arabinose- phosphoundecaprenol deformylaseEAJ18_19010Not AvailablePositive3887307 - 388820933590.9
lipid iv(a) 4-amino-4-deoxy-l-arabinosyltransferaseEAJ18_19015Not AvailablePositive3888206 - 388986162284.9
4-amino-4-deoxy-l-arabinose-phosphoundecaprenol flippase subunit arneEAJ18_19020Not AvailablePositive3889858 - 389019312316.0
4-amino-4-deoxy-l-arabinose-phospho-udp flippaseEAJ18_19025Not AvailablePositive3890193 - 389057914051.9
signal transduction protein pmrdEAJ18_19030Not AvailableNegative3890583 - 38908469729.62
o-succinylbenzoate--coa ligaseEAJ18_19035Not AvailableNegative3890945 - 389231550241.7
o-succinylbenzoate synthaseEAJ18_19040Not AvailableNegative3892312 - 389327435415.4
1,4-dihydroxy-2-naphthoyl-coa synthaseEAJ18_19045Not AvailableNegative3893274 - 389413131684.9

Displaying genes 3831 – 3840 of 4739 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.